barSeed - Barley Seed Development Database

Probe CUST_15013_PI390587928

Source Contig U35_18788

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15013_PI390587928	Hv_44K_v2	CCATCCTCTTGTTTCTTACGGCTTAAATATCTCCTAAACGTGTAAATTCGATGTATATCA	1400	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.088	3.011	1.012	0.908	0.359	0.603
Raw	406.428	472.376	137.022	200.156	27.278	48.948

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357083	2944	2e-24	1377 - 1436	100	60 / 60	plus	ABC10628 ABC13844 ABC17852 ABC41122 ABC44969
MLOC	MLOC_55781.3	1606	2e-24	1452 - 1511	100	60 / 60	plus	ABC10628
JLOC1	JLOC1_36021.4	1775	8e-25	1552 - 1611	100	60 / 60	plus
JLOC1	JLOC1_36021.3	1779	8e-25	1556 - 1615	100	60 / 60	plus
Harvest21	ABC10628	1518	3e-25	1401 - 1460	100	60 / 60	plus	ABC10628
Harvest35	U35_18788	1519	3e-25	1401 - 1460	100	60 / 60	plus

Contig Sequence (1519 bp)

>U35_18788 1519 Hv_44K_v2
GTCAGTCCAGCCCTCGTCTCGTCTCGTGCCGTCTGCTCGGGACCAGGAGAGATGACGCCG
CTCCACGCCGCCCCGCCGCCGCTCTCCGCGTCGGCTGCGGTCTCCTCATCCGCGCCACCG
CCCCTCCTCGCCAAGCCTTACCATCCCAAGGCCGCTGCCCTCTGCTCACTCACCGTGACC
GCCGCCACCCCGTCAAGAAAAGCTTTCCTCGCATGCCCGGATCACGGCCCGGCGGCCGGG
CGGTCGCTGGCGCCGGCGCGCGGCGCTCCCGCCTCGTCCCCGGCGCTCATCTCGGCCGTG
CAGGACCTGTACGAGTTCATCTGCAGCGGCCCGCTGGTGGACAGGATTGGCTACACTCGG
GAGAAGATCGCCGAGTCCATCGACCGCTGGCTGTGGTGCGGCTCGCAGGTGAGCCGGTTG
TTCCGCATCGACGAGCTCCGGCTGACGGACGCCGAGAAGTCGAGGATATACCACTTCTAC
ATACCCGTCTTCCTCTGGTGCGAGGACCAGGTCGCCGATCACAGGTCAAAGTACAACGAC
GGCGACGAGATCCCGCCATTAGTGATTGGGGTCAGCGCTCCCCAAGGCAGCGGGAAGACG
ACTCTTGTTTTCGCCCTTGATTTTCTTTTTCGGGTTTCTGGTAGGAACTCTGCCACATTA
TCTATCGATGACTTCTATTTGACTGCAGCAGAACAGGGTAAACTGAGGGAAGCACATCCT
GGAAATGCTCTTTTAGAGTTTCGTGGAAATGCTGGAAGCCACGATCTCCAATTCTCAGTT
GAAACACTTGAGTCACTGATCAAACTAACAAAGGAAGGTACGAAGATGAAGCTTCCACGG
TATGACAAGTCCGCTTTTGGTGGAAGAGGTGACCGGGCTGATCCTTCGACATGGCCAGAG
GTTGAAGGGCCAACAGAGGTTGTTCTCTTTGAAGGATGGATGCTTGGATTTAAACCTCTT
CCAAATGAAGTTGTAACAGCAGTGGATCCTCAGCTCGAGGTGGTTAATAAGAACCTAGAA
GCATACTATGACGCGTGGGACAGATTCATCGAGTCATGGATTGTCATAAAAATCAAGGAG
CCTAACTGTGTATTTCAGTGGAGACTGCAGGCAGAGGTAGCTATGAGAGCTGATGGTAAA
ACAGGAATGTCTGATGAGGAGGTTATGGATTTTGTATCACGCTACCTACCAGCATACCAT
GCGTATTTGCCCACTCTATATAAAGAAGGACCAAATGGCGCGAAGGAAGACCATCTGCTG
GTCATTGACATAGACGAAGAGAGGACTCCTATCTCTGGTAGTTGAGTGCTGAATGTACAT
TCTGAAATGGATATCTTGACTTGGTGGTTGAGCTTGGGATTTCTGATCTTTCTGAGACCA
CTTATGCCAAGCAAGCACCACCATCCTCTTGTTTCTTACGGCTTAAATATCTCCTAAACG
TGTAAATTCGATGTATATCAAGTTGTGCTATCTATTTAAAGAAACTGGCATCCCATTTTT
CAAAAAAAAAAAAAAAAAA

Homology of Contig U35_18788 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g48990.1	419	0.0	protein\|uncharacterized kinase mug58, putative, expressed
Brachypodium v1_2	Bradi2g46690.1	422	0.0
Arabidopsis v10	AT1G80380.2	456	2e-180	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr1:30217332-30219784 FORWARD LENGTH=456