barSeed - Barley Seed Development Database

Probe CUST_15008_PI390587928

Source Contig U35_18793

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15008_PI390587928	Hv_44K_v2	CGGCACGCTGTAACATAAAAATAACGCTTCATTGGCATGCATGTTACTACTAGTAAAAAA	649	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.023	3.812	1.208	0.731	0.211	0.260
Raw	1707.883	2033.259	586.953	600.012	56.279	75.702

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3162.1	1775	9e-22	253 - 307	100	55 / 55	minus	ABC11682
MLOC	MLOC_3162.2	1026	9e-22	48 - 102	100	55 / 55	minus	ABC11682
JLOC1	JLOC1_1894.1	1323	5e-22	1040 - 1094	100	55 / 55	plus
Harvest35	U35_18793	720	3e-25	650 - 709	100	60 / 60	plus

Contig Sequence (720 bp)

>U35_18793 720 Hv_44K_v2
ACAAGTGCTATTTCGATCTCCTCTCTCCGTCGCGCGCACACACACTATCCTTTCGTGAAG
CTCCCGAGCTCGATCGGCGACCGAAGCAATGGCGTCCATCCGGCGGGATCTGCTCGTGGC
GCTCTGCGTGGCGGCGCTGCTGGCCGTCGGGTCGGAGTCCCACGGGCTGGAGGACTTCGG
CAACGAGGGGAAGACGGAGGCGACGCCGGAGATGGCCTCCTTCTTCGGCGCCAAGCCCGA
GGCCGCCGTGCTCCCGGAGGCGCTGGACAACTCCAAGGCCGCCAAGCCGGAGGCGGCCTC
GGCGATGCCCACCACCACCAACACCAGCGCACGTCAGTCCCCGCCGCGCAGATCCGTGGC
CGTGGCCGCCGGTGTGGCCTGCGGCGTCGCGGCACTGGCCGTCGTCGGCGTGGCAGTCGC
CGTCGCCTTCGTGGTGCGCGCCAGGCGCGGCGAGAGGCGCGAGGCCGAGGTCCAGCTCGG
CTAAACCGGCCACGAGCCCGGCTTGGTTTGATTAGGGGCTGCTCGTCAGTTCGTTAGCGT
CGTGATTCGCGTTTAGTTAATTGTCTGTTTAGTTTGATGATGATTTCTTCCTTCCGTTCT
TCCGCTGTTCGTGCGTGTGTGTGTGATGGAGATTTGGGGAGCTACGGAGCGGCACGCTGT
AACATAAAAATAACGCTTCATTGGCATGCATGTTACTACTAGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_18793 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None