barSeed - Barley Seed Development Database

Probe CUST_15006_PI390587928

Source Contig U35_18795

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15006_PI390587928	Hv_44K_v2	TTTCTTTTTTGTTCGAGTGGCCAAATCGCTCTTGGCAGAGCAAGTGCATGATGAAGTGTC	805	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_46311.1	709	2e-24	329 - 388	100	60 / 60	minus	ABC09688 ABC24951
JLOC1	JLOC1_29995.1	669	8e-25	289 - 348	100	60 / 60	minus
Harvest21	ABC09688	870	3e-25	799 - 858	100	60 / 60	plus	ABC09688
Harvest35	U35_18795	877	3e-25	806 - 865	100	60 / 60	plus

Contig Sequence (877 bp)

>U35_18795 877 Hv_44K_v2
GCCATTGAGAAACCATCCCCATTGTTGCCTGCTTAGAGACGCTGATGCGCCGCACGTCGT
CGCCGGGCTGTGCTCCCTTTCCTGTAAGGGGATTTTTTTTCTATGCCGCCGTAGTTGTGG
GGAGGAGGTCGCCGCGCCGAAAGGCGCTGCCGTCGTTCGGGTCGTGGCATCGAGGTGTGC
GTGGTGCTGTGCGCCAGGGCAACGCCGACTGCGGCCGTTTGCTCGGACTTGAGCGCGGGG
CCACCTCCATCGCGTGATGCGGCTGCTCTGCGAGGAGCCGGGCCGAGGTCCGCTCGGAGG
AGCGGCGTGTGGTGGATGTGGTCTCCGCGCCCGGAGGAGTGATGCTTATGCGCGCGTCCT
CGACGAGGTTGCTGCCGCTGCAGTGATGGCGAGAAATACATGATACCTTCTTCTGTTTGT
ATGATTTGATGATTCTTCTTGATTGATTGAGGTTTTCTCTTCCTTGGTCATGGATTTCTT
TCGGTTGATGCTTCAACCATCTGTTCATCTCACCATGTTCACATATTATGTGCAGAAAAG
CAGTTAATCTCCAGATCACGGGAAGAACAAAAATTAAACAAAATTAGTGTTTCGTGATCG
ATTTCCCGATGCGCGTTATATCGCCGGAGTTGCTTGGTGCTGTTCGTCGTCGCTTGACGC
TGACGGGTAGCGTGGGAGGGTGGCCTCACCGGGCGCAACAATGGCGCCGTGGGCTGTCGG
GCGCTTCGTTCTCAGGACTCCGTCCTCGTGCGAGCGTCTTCGCATCCAGATGCGGGGATC
CGTTGTTTCCCCTCTTTCCTCTCGCTTTCTTTTTTGTTCGAGTGGCCAAATCGCTCTTGG
CAGAGCAAGTGCATGATGAAGTGTCCGAGTAAAACGA

Homology of Contig U35_18795 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None