barSeed - Barley Seed Development Database

Probe CUST_15003_PI390587928

Source Contig U35_18798

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15003_PI390587928	Hv_44K_v2	GTTTTGGCTGATCTAGTCTGAACAATTGTTGGTTAATCTGAAAATTATAGGTGCATGTGA	1820	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.717	2.074	1.138	0.833	0.447	0.514
Raw	1179.368	1416.324	684.974	774.323	147.423	184.729

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374032	1956	2e-24	1880 - 1939	100	60 / 60	plus	None
MLOC	MLOC_49031.1	1475	2e-24	1415 - 1474	100	60 / 60	plus	None
JLOC1	JLOC1_31423.1	1564	8e-25	1440 - 1499	100	60 / 60	plus
Harvest21	ABC09635	1882	3e-25	1821 - 1880	100	60 / 60	plus
Harvest35	U35_18798	1882	3e-25	1821 - 1880	100	60 / 60	plus

Contig Sequence (1882 bp)

>U35_18798 1882 Hv_44K_v2
GGCGGCGACTCCTCCCCGGTCTATCTCGTTCGGCGGCAGATGGTGACCATGGGTACGAAG
GAGCAGGAGGACGAGGCGCCCGAGGAGCGCGTGCCGCACCTGCCGTGGATGCGGCACCCT
GTCGACATCGACTCCTTCTCCGCCTGCCCCGTCGCGAGCCTCCCCCGCCTCGACCCCAGA
TTGGCAGAAGCATTGCAGCGGATGGGAATCGAATCGTTTTTCCCGGTCCAGGTATCAGCA
TGGCTGGAGACAATTGGTCCTGGTGCTTTTCAGAGGGATATCTGTATTAACTCCCCGACT
GGGTCCGGCAAAACCCTTGCTTACGCCTTGCCTATTGTGCAAATGCTCTCCACTCGGAAA
GTAAGGTGCCTGCGTGCTTTGGTTGTGCTACCTACAAGGGATTTAGCATTGCAGGTTAAA
GAGGTTTTTGATGCTATTGCTCCTGTGGTGGGCTTGACAGTAGCATCAGCAGTTGGTCAA
TCGTCCATCGCGGATGAAATCTCAGATCTGATCAAGAAGTCCAAACAAGAGCTTTACCCA
TCTCTTGATGATGAATATGTCGAAATGGAACCACAGACTAAAGTTGATATATTGGTGGCA
ACTCCTGGAAGATTGATGGATCATATCAACATGACAAAAGGTTTTAGTCTGGAGCATCTT
CAATACTTGGTTGTTGATGAGACAGATAGGATGTTGAGAGAGGCATATCAGTCCTGGTTG
CCAACAGTTATCCAGTTTACTCGCCCGACTAAGCAAGATCTTTTCCGGCATGACACTACC
GGACGAACTCTACTTCATCCATTGACTACCATTAGAAGATCGGGTGTCGAGCGAGGGTTT
AAAGGTAAATGCTATCCAAGACTGGCAAAGATAGTCTGCTCTGCTACATTGACTCAAGAT
CCCAGCAAACTTTCTCAACTTGAGTTGCATCATCCTTTGCTGTTGAATAGTGGGAAGAAG
CGTTACAGAATTCCTGAAAAGCTGGAGTCCTACAAGCTGATCTGTACATCAAACATTAAG
CCACTGTGTCTTATTGTTCTCCTCCAAGAGCTGCGTGGGGAGAAGTGCTTGGTTTTTACT
AAATCTGTAGATGATAGTCACAGACTAAGCACTTTACTGGGATTTTTTGAAGACTTGCCC
TTTAAGTTTAGTGAATTTTCAAGTTTGCAGCGTGAATCTACTCGAAGGAAGACATTGGCA
GCCTTCAAGGAAGGGGAAATAGATGTCCTAATCGGCTCAGATATAATGGCTCGAGGAATA
CATATCAATGGTTTAAGATATGTTATCAACTATGAGATGCCGCAGTATGTGAAAACATAC
ATCCACCGAGCAGGCCGGACTGCCAGGGCAGGCGAATCTGGTTCTTGCTTCACGTTTTTA
AGGAAAAATGAGGTTAAAAGATTTGACAAGTTGCTGAAGAAGGCAGATGGTTCTAGCTGC
ATCCTACGCTCACTACCCGAGGAATCAATAGAAAGCCTTCGCCCAGTTTTTGAGACCGCT
CTGGAGAAACTGAAAGATAAACTGAAAGGGTCTGCGGAACCAGAAGCATCAAAGAAATCT
AACAACTCAGGAGATAAAGCGCCGGGAGCTTTGAAAAGAAAGAGAGGCAAGCAAACGTGA
AGTGTAATCGATCAGTCGGTATTCTGAATTGTTTTTCATAAACGTCTTAAATCCCCTTCT
GGTACATATATTTGGGGAGCCCTACTATCTGAAGATGCGGCATGTTTTTTTTTTCCTGTT
TGCTTTTTCTATATGTAGCACCTCTGTTACCGCTACTGATCGACACAGCGCAATTCAATT
GTGGATCGTGTGCTTTAGTAGTTTTGGCTGATCTAGTCTGAACAATTGTTGGTTAATCTG
AAAATTATAGGTGCATGTGAAA

Homology of Contig U35_18798 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g55260.2	522	protein\|DEAD-box ATP-dependent RNA helicase, putative, expressed
Brachypodium v1_2	Bradi3g54080.1	523
Arabidopsis v10	AT4G15850.1	522	\| Symbols: ATRH1, RH1 \| RNA helicase 1 \| chr4:9001426-9004534 FORWARD LENGTH=522