barSeed - Barley Seed Development Database

Probe CUST_15002_PI390587928

Source Contig U35_18799

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15002_PI390587928	Hv_44K_v2	CATGTGCTCAACGATGTTTGCGTCAAGGAAGACGATTTGATTTATATTCTCTACGGCAAA	1618	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.612	1.571	1.144	0.847	0.364	0.365
Raw	19486.467	29491.060	18864.467	21666.377	3332.340	3616.423

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16279.2	3499	2e-23	3217 - 3274	100	58 / 58	plus	ABC09627
MLOC	MLOC_16279.1	3519	2e-23	3354 - 3411	100	58 / 58	plus	ABC09627
JLOC1	JLOC1_11206.1	3493	1e-23	3269 - 3326	100	58 / 58	plus
Harvest21	ABC09627	1690	3e-25	1617 - 1676	100	60 / 60	plus	ABC09627
Harvest35	U35_18799	1692	3e-25	1619 - 1678	100	60 / 60	plus

Contig Sequence (1692 bp)

>U35_18799 1692 Hv_44K_v2
ACATGATACACAACATGAAAAGATTATCAGGGGTTTGGCACTTGGCATTGCATTGACGGT
GTATGGCAGGGAGGAGGAAGCTGACACCTTGATCGAACAAATGACTAGAGATCAAGATCC
CATACTACGATATGGTGGTATGTATGCATTGGCTCTAGCCTACAGAGGAACTGCAAATAA
CAAAGCTATCCATCAGTTGCTGCATTTTGCTGTATCGGATGTCAGTGATGATGTTCGTAG
GACTGCAGTTATGGGTCTTGGATTTGTTCTATACAACGAACCGGAGCAGACTCCAAGAAT
TGTGTCCCTGCTCTCTGAATCGTACAACCCGCATGTTCGCTATGGTGCTGCTTTAGCTGT
TGGGATATCCTGTGCCGGAACAGGGTTAAGTGATGCCATTTCCTTGTTGGAGCCTCTCAC
ATCAGACGTTGTTGACTTTGTGCGCCAGGGGGCTCTAATTGCTATGGCAATGGTCATGAT
CCAGACGAATGAATCCTTTGATTCTCGTGTTGGAACATTCAGGCGTCAGTTGGAGAAGAT
CATTCTTGACAAGCATGAGGACACCATGAGCAAAATGGGTGCCATACTTGCTTCTGGTAT
TCTGGATGCTGGTGGTAGGAATGTCACAATCAAACTTCTCTCGAGGAACAAGCATGACAA
GCTCACTGCTGTGATTGGCCTTGCTGTTTTCACCCAGTTCTGGTACTGGTATCCACTCCT
ATACTTCATCAGTTTGGCCTTCTCGCCAACAGCCATCATTGGTCTCAACTCAAACCTGGA
AGTGCCGAAGTTTGAATTTCTGTCACATGCTAAACCGTCCCTCTTTGAGTATCCCAAACC
GACCACTCAGCAGACTACAACTTCAGCTGTCAAGCTGCCCACAGCCATTTTGTCGACCTA
TGCCAAGGCAAAATCTAGGGCGAAGAAGGATGCAGAAAGCAAAGCTGCTAACCAGGAGAA
GACAGCTGAAGCAGAGAGCAAAGCTAACCAGGAGAAGTCAACAGCAGAAAGCAAACCTAG
CCAGGAGAAATCAACGGAGGCAGAAAGCAAAGCCAAGACGACGGAGGATGCTTCTGGTTC
TACTGCAGGCGAGGCATCTAAAACACAGGAGAAGGACGGTGATGCAATGCAGGTTGACGG
CGCAGCAGAGAAGAAGGCCCCGGAGCCAGAACCTGCCTTCCAGATCCTGGCGAACCCAGC
CCGCGTTGTTCCCGCGCAGGAGAAGTTCATCAAGTTCATCGAGGGCAGCCGATACGTCCC
TGTGAGGCCCGCACCCTGCGGGTTCATCCTCCTCCGAGACACGCAGCCCAGCGAGGCGGA
GGAGCTCGTGCTCACCGACGCCCCCGCGACTGTGGCCACGGCCGCCGGCAACAACGCAGC
AGCCGCTGCTGCGGGGCCAGGCTCGGCCGCCATGGCCGTGGACGACGAGCCCCAGCCACC
CCAACCTTTTGAGTACTCGGCCTAGGCTGTCGTGATAGGAGGGAACGTTGTCTGTACTCA
CTGACTAGCTATACGTTGTTGCTTATTCCTTTTTCGATTGCGGGAATTTGTTGTTTGTTG
GAAACTGTGTAGAATCATCATGAGTAGAGAACTCAAACTCTGAACGGGAGTTACAGGACA
TGTGCTCAACGATGTTTGCGTCAAGGAAGACGATTTGATTTATATTCTCTACGGCAAAAA
AAAAAAAAAAAA

Homology of Contig U35_18799 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g51910.1	782	protein\|proteasome/cyclosome repeat containing protein, expressed
Brachypodium v1_2	Bradi5g21080.1	1021
Arabidopsis v10	AT2G32730.1	1004	26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit \| chr2:13880189-13885464 FORWARD LENGTH=1004