barSeed - Barley Seed Development Database

Probe CUST_14994_PI390587928

Source Contig U35_41111

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14994_PI390587928	Hv_44K_v2	AATCAGTTATTTGTGCTGAGTTCTGCATTGACTTGTGTGTGACAGGCAGAGAGTAGGTGC	284	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.222	0.622	1.376	1.874	0.734	1.160
Raw	2.886	22.485	42.881	97.215	12.927	22.251

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_41111	491	3e-25	285 - 344	100	60 / 60	plus

Contig Sequence (491 bp)

>U35_41111 491 Hv_44K_v2
AAAGGGGGAGATCAGATTAGCTTCCTCTATCCAAGGTGCAATTCTGACTTGCTTTAATTT
TCATGCAAGTTATCAGACTGAATAAATTACATAATTAACATATCTTTATGATTCTACAGT
GGGGTTGACCGCTTTAAGCGGCAGTTTGCGCACCTGGAGGAGCATTACAGCAAAGGAGAA
CGAGGTTCTCCACTGCAAAGAAAGCATGCCTCTTTACCGAGGTACATATAACACCGCAGC
CATCAGAAATCCGAAGTGCCGAGCTTCTTACCCTGATCTCGGTTAATCAGTTATTTGTGC
TGAGTTCTGCATTGACTTGTGTGTGACAGGCAGAGAGTAGGTGCATCGAACGACAGTAAT
AATGAACAGCATATTAGTGATCAGGAGATGAGTGCAGAGCCTGATGCCCATGGTGCAGTG
AGCCCTCAAAAGCCACAGGATGCACCCGGTGTTGGTCAGAATGGTCTGAGCCCCACCCAG
CTTGAGCTCGC

Homology of Contig U35_41111 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None