barSeed - Barley Seed Development Database

Probe CUST_14991_PI390587928

Source Contig U35_41114

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14991_PI390587928	Hv_44K_v2	GGTTCAAGGATTGCCAGGGATGCAAACATATAGAGGCCCATTTGATGTGATAAATAAGGT	58	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65478.1	1673	2e-24	868 - 927	100	60 / 60	minus	ABC18844
MLOC	MLOC_65478.2	1670	2e-24	868 - 927	100	60 / 60	minus	ABC18844
JLOC1	JLOC1_43094.2	1748	8e-25	673 - 732	100	60 / 60	plus
JLOC1	JLOC1_43094.1	2115	8e-25	1040 - 1099	100	60 / 60	plus
Harvest35	U35_41114	394	3e-25	59 - 118	100	60 / 60	plus

Contig Sequence (394 bp)

>U35_41114 394 Hv_44K_v2
CAAGTATCTTTTCAAGTTCATATTCTGTACCCCTAGATGTGGTTTGTCAGAGGCTCATGG
TTCAAGGATTGCCAGGGATGCAAACATATAGAGGCCCATTTGATGTGATAAATAAGGTTG
TCAGGAGTGAAGGCCTCCGGGGCCTTTACCGAGGTTTTGGAATTACCCTTTTAACTCAAT
CACCAGCTTCTGCCCTTTGGTGGAGTTCATATGGTGGTGCTCAACATGCTATCTGGAGGA
GCTTGGGCTACGGGATTGATACACAAAAGAAACCTTCCCATTCAGAACTTATTGCTGTGC
AAGCAACAGCTGGAACAATTGCTGGAGCTTGCTCATCGATTATCACTACACCAATAGATA
CCATCAAGACCCGGCTTCAGGTAATGGACAACTA

Homology of Contig U35_41114 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g22600.1	330	9e-81	protein\|mitochondrial carrier protein, putative, expressed
Brachypodium v1_2	Bradi2g12390.2	331	3e-81
Arabidopsis v10	None