- Probe CUST_14981_PI390587928
- Source Contig U35_49014
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14981_PI390587928 | Hv_44K_v2 | TTGCTTTGCTTTGTGGTGGTTGGTTTACAACCGTGTTGTAAGAGCCTGTGGTAATGTTTG | 0 | GeneList: darkred MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.995 | 1.349 | 1.705 | 1.252 | 0.535 | 0.507 |
| Raw | 23707.013 | 49352.167 | 54931.233 | 61844.567 | 9478.033 | 9802.300 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_46368.1 | 2257 | 1e-22 | 1843 - 1901 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC50944 | 591 | 3e-25 | 1 - 60 | 100 | 60 / 60 | minus | ABC50944 |
| Harvest21 | ABC00089 | 1702 | 5e-23 | 1579 - 1637 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC33068 | 535 | 2e-21 | 39 - 97 | 97 | 58 / 60 | minus | |
| Harvest21 | ABC00127 | 718 | 2e-21 | 66 - 124 | 97 | 58 / 60 | minus | ABC00127 |
| Harvest35 | U35_49014 | 591 | 3e-25 | 1 - 60 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_37295 | 535 | 2e-21 | 39 - 97 | 97 | 58 / 60 | minus | |
| Harvest35 | U35_14073 | 1699 | 2e-21 | 1576 - 1634 | 97 | 58 / 60 | plus |
Contig Sequence (591 bp)
>U35_49014 591 Hv_44K_v2 CAAACATTACCACAGGCTCTTACAACACGGTTGTAAACCAACCACCACAAAGCAAAGCAA ACATTCAAACAGATAAACCCACTTGAAGCCAGTGGGGCACCAATCGACGAACTGGATGGT GCGCTTGGTCTTGATGGTGGCCACAGCGGCATTGACGTCCTTGGGCACAACATCACCACG GTACATGAGACAGCAGGCCATGTACTTGCCGTGGCGGGGGTCACACTTGGCCATCATGGA GGAAGGCTCGAAGGCGCTGTTGGTGATCTCGGCAACAGAGAGCTGCTCATGGTAAGCCTT CTCAGCTGAGATCACTGGGGCGTAGGAAGAAAGCATGAAGTGGATCCTCGGGTAGGGCAC CAGGTTGGTCTGGAACTCATTCACATCGACGTTCAGAGCACCATCAAACCTCAGGGAAGC AGTCAGGGATGAGATGACCTGAGAAACGAGCCTGTTGAGGTTGGTGTATGTTGGGCGCTC AATGTCAAGGGAGCGGCGGCAGATGTCATAGATGGCCTCATTGTCAAGGAGGACAGCCAC ATCAGTGTGCTCAAGGAGAGAGTGGGTGGACAGGACACTGTTGTATGGCTC
Homology of Contig U35_49014 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g51600.2 | 434 | 1e-117 | protein|tubulin/FtsZ domain containing protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g10150.1 | 452 | 1e-117 | |
| Arabidopsis v10 | AT4G14960.2 | 450 | 7e-114 | | Symbols: TUA6 | Tubulin/FtsZ family protein | chr4:8548769-8550319 REVERSE LENGTH=450 |