barSeed - Barley Seed Development Database

Probe CUST_14972_PI390587928

Source Contig U35_25061

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14972_PI390587928	Hv_44K_v2	AGGAATATCGACAACACTATTCTCGTGGAAAACCACTGACGATGCTAAGTAGCACCACAC	725	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.220	1.273	1.185	0.639	0.486	0.310
Raw	48.796	70.429	64.932	50.339	13.779	10.177

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376117	2567	2e-24	785 - 844	100	60 / 60	plus	ABC15642
MLOC	MLOC_12057.2	792	2e-24	392 - 451	100	60 / 60	plus	ABC15642
MLOC	MLOC_12057.1	760	2e-24	454 - 513	100	60 / 60	plus	ABC15642
JLOC1	JLOC1_8054.1	696	8e-25	390 - 449	100	60 / 60	plus
Harvest21	ABC28009	645	3e-25	576 - 635	100	60 / 60	plus
Harvest35	U35_25061	795	3e-25	726 - 785	100	60 / 60	plus

Contig Sequence (795 bp)

>U35_25061 795 Hv_44K_v2
GCAGCCCAGGCCAAGCCAAACCAAGCCAAGCCAAAGCAGAAGCTAGGCGGACACGACGTG
AGCTCCCCGCCGCCGCCAATGGGCTCCTCTCCGGCCGTCGCCTCCCCCACCCCATCTCCG
CCTTCTTCTCCGCCGCCTCCTCTCCACCGCCCCTGCCCCCTCCCGTCTGCTCACGGTCCC
CCCCCCCTCCGCTCGACTCCCCTTCAGACCCAGGGTTGTGGCGGCGGCGGTCCCAGGGCG
CAATGGGGTCGCGGTGAGGGCTTTCATGGCCTCCACGGCGGCATCCGATGCGATGCAGGA
GAAGCGGGTGGCCGGCGAGTACACCGCAGCAAACGTCCAGGTCTTAGAGGCATTGGACGG
AGTTCGCAAAAGGCCTGGTATGTACATTGGCAGCACAGGACCACGTGGGTTGCATCATCT
GGTTTACGAAATATTGGATAATGCTGTGGATGAAGCTCAAGCAGGCTATGCTACTGAGAT
TAATGTAGTCCTTCATGATGACAATTCAGTTAGTGTAACCGACAACGGCCGTGGGATCCC
TACAGATATACACCCGCAGACAAAGAAATCATGCGTGGAGACTGTCTTAACGCTAATGCA
TGCTGGTGGCAAATTTGGAGGCTCAACGAGTAGCTACAGCGTTGCTGGAGGGCTGCATGG
TGTTGGCCTATCAGTTGTTAATGCGTTGTCAGAGGCACTAGAAGTTACAGTTTGCCGTGA
TGGGAAGGAATATCGACAACACTATTCTCGTGGAAAACCACTGACGATGCTAAGTAGCAC
CACACTGCCTGATGA

Homology of Contig U35_25061 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g16290.2	617	3e-114	protein\|DNA gyrase subunit B, chloroplast/mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi2g10040.1	724	6e-122
Arabidopsis v10	AT5G04130.1	732	1e-80	\| Symbols: GYRB2 \| DNA GYRASE B2 \| chr5:1122084-1128031 REVERSE LENGTH=732