barSeed - Barley Seed Development Database

Probe CUST_14964_PI390587928

Source Contig U35_37042

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14964_PI390587928	Hv_44K_v2	ACTTCTTCCTAAGATGGCCAAGTTGACGAAACAAGTTACTGCACAAGTCAAGCTGCTTGC	495	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354857	3587	2e-24	2121 - 2180	100	60 / 60	plus	ABC14698
Harvest21	ABC32643	595	3e-25	496 - 555	100	60 / 60	plus
Harvest35	U35_37042	595	3e-25	496 - 555	100	60 / 60	plus

Contig Sequence (595 bp)

>U35_37042 595 Hv_44K_v2
GAAGCCACTTAAATGGATTAAAGTTCCAAAGCACAATGGTGACGGTGAAGAGGATCGGCC
AATAGAAGCCCTGATGATTCTGAAATATGGTGGTGTACTCACTCATGCTGGCAGAAAGCA
GGCAGAAGAACTGGGAAGATTTTTCAGAAACAACATTTATCCAGGGGAAGGAACAGGTTT
GCTTCGCCTTCATAGCACGTACAGACACGATTTGAAAATATACAGTTCAGATGAAGGACG
TGTTCAGATGTCTGCTGCAGCATTTGCGAAAGGTCTTCTTGATTTGGAAGGACAACTAAC
TCCCATACTGGTCTCTCTAGTAAGTAAAGACTCTTCTATGCTAGATGGATTGGAAGATGC
TAGCATTGAGATGGATGAAGCTAAGGCAAGATTGCATGAAATCATCATTTCAAATACTAA
AGCAAACAATACCAATGGATCGGTGGAGTTTCCGTGGATGGTTGATGGTGCAGGATTGCC
TCCAAATGCTTCTGAACTTCTTCCTAAGATGGCCAAGTTGACGAAACAAGTTACTGCACA
AGTCAAGCTGCTTGCCGAAGACGAAGATGAGAAGCTTGCTCTGACAAGCTCATTT

Homology of Contig U35_37042 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g48300.3	775	1e-110	protein\|histidine acid phosphatase, putative, expressed
Brachypodium v1_2	Bradi1g12140.1	1045	5e-113
Arabidopsis v10	AT3G01310.1	1056	2e-94	Phosphoglycerate mutase-like family protein \| chr3:94343-101603 REVERSE LENGTH=1056