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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_14953_PI390587928Hv_44K_v2GAATGTAGTTCGATAGTGTAGGCAAATCGACATTCTTTTCATCACTTGCACTCAAAAGGA3GeneList: yellow
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.2652.3031.2050.8710.4190.596
Raw 175.050280.547129.096143.86225.04337.617



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_48422.443522e-2442 - 10110060 / 60minus None
MLOCMLOC_48422.141572e-2460 - 11910060 / 60minus None
MLOCMLOC_48422.243992e-2460 - 11910060 / 60minus None
MLOCMLOC_48422.342062e-2457 - 11610060 / 60minus None
JLOC1JLOC1_31104.346448e-254276 - 433510060 / 60plus
JLOC1JLOC1_31104.244098e-254041 - 410010060 / 60plus
JLOC1JLOC1_31104.144358e-254067 - 412610060 / 60plus
Harvest21ABC509636343e-254 - 6310060 / 60minus
Harvest35U35_490226343e-254 - 6310060 / 60minus



Contig Sequence (634 bp)

>U35_49022 634 Hv_44K_v2
TTTTCCTTTTGAGTGCAAGTGATGAAAAGAATGTCGATTTGCCTACACTATCGAACTACA
TTCTTGGCCCCGCTGTCAGTTCCCAAAGCTGAATCCTGGACTGGGGCAAATTCTTGAGGG
CGTGTGCTGTGATCCGCCCTTTGTGGAATCATCTATCCTCACTATGTACAATCCTTCCTC
GCCGGAAATCAGAATCGATGAATGCATCACCAGAAGATGTTTTCTGGCGATCCATATGTG
TGTGCACCAGCAAAAACATGATGCAAAAAATGGCTCCTAATTAGCTGGTACGAGTTCCTT
CTCAAGTTGGCCAAATATCTTCTTGAGGCGAGAAGACAACTTCGATGCCACCTCTTGCGT
GATCTTCTTTCGATTCTTGCAGCTCTTTAGCCATGCCATGCCAATAAATACTTGGACACT
GCATGACTTCTGCTTGGACGAATTCTGCTCCAACTGGTATCGAATATGGAGCTTCAAGTG
TCATCACTTCTTCAACGAGCCATCCATTCTTATCAGGCAATGGGCACTTTTGTTGGGTGC
TCATTACTTCCCCCTCACGGCGTGCCACTTTCTTGTCAAGCCTGTAATGGACTTGTCTCT
GGTGCACATCAGCCCTGACTGGTTCCCATGCTGT



Homology of Contig U35_49022 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None