barSeed - Barley Seed Development Database

Probe CUST_14947_PI390587928

Source Contig U35_49027

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14947_PI390587928	Hv_44K_v2	CTTGATTTTCATCTCTGGGGTTGTTTGGATAAGGATTTTTTCCTAAAACCGTTTCCTATA	4	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.130	1.768	1.203	0.826	0.390	0.400
Raw	1911.710	2491.980	1481.047	1583.917	265.027	295.081

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_22261.1	1274	8e-25	1030 - 1089	100	60 / 60	plus
Harvest21	ABC01939	994	3e-25	931 - 990	100	60 / 60	plus	ABC01939
Harvest35	U35_49027	671	3e-25	5 - 64	100	60 / 60	minus

Contig Sequence (671 bp)

>U35_49027 671 Hv_44K_v2
CTCTTATAGGAAACGGTTTTAGGAAAAAATCCTTATCCAAACAACCCCAGAGATGAAAAT
CAAGATCGCATAGATCTTTGATATAAAAGGCACAACGGAGAATCTTAACAGAAAATGCAG
TTCTATTGCTCCCATGATTTCTGTTCAACAAAAGACTAACAAGATAAAATACTTGTTGAT
GTTCGCTTAGGTAAACACAAAATTGGTATCAGTGAAACAGATCTAATCCAAAGACAAGCT
CGGGTCGACAGGACAGCCACTGGAGAACACCAACTTAGAACACCCGTACACGCTTCCCCA
TGGTGCTCTTCACGTACAGGCACCTCACATTCTGCCAGTTCTTCTTCAGGAGGGACACAA
GGAAGTTGACGCTCATTTGGATGTTTTGTTGGATCTGCTTCTCGTCCATCGACAAGTTGC
CCACAGCAACACCCATGCAAAGAACCTTCTTTAGCTGGAACTTGACTGTAGCTTTTGTCT
CGTTCACCTTGGCTTCAAGAGATTCCTGGTGACTTACCAGAGTGGGAAACTTGCCTGCCT
TGTTAAGACCAGGGCCAAGGAGACGAGGGATCTGCTTGATTATGGCCTCTGATGCCAGGA
AAGCATGGTACTTCTTGGCTAGCTTCTTAACAAGCTTCTTGTTCTTGTTCATCTTCTTAA
GACTTTCAACA

Homology of Contig U35_49027 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g44450.3	134	2e-69	protein\|L1P family of ribosomal proteins domain containing protein, expressed
Brachypodium v1_2	Bradi3g42800.9	217	3e-71
Arabidopsis v10	AT2G27530.1	216	4e-65	\| Symbols: PGY1 \| Ribosomal protein L1p/L10e family \| chr2:11763443-11764570 REVERSE LENGTH=216