barSeed - Barley Seed Development Database

Probe CUST_14944_PI390587928

Source Contig U35_25070

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14944_PI390587928	Hv_44K_v2	AACATCGTGTCCGAGCATGGCGAGAAGGCGCCCAACGTCGTCTACAAGGGGAAGCTCGAC	375	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368872	2258	2e-24	495 - 554	100	60 / 60	plus	ABC11518 ABC19976 ABC23613
MLOC	MLOC_4572.1	2282	2e-24	1679 - 1738	100	60 / 60	minus	ABC11518 ABC19976 ABC23613
MLOC	MLOC_4572.2	2141	2e-24	1679 - 1738	100	60 / 60	minus	ABC11518 ABC19976 ABC23613
JLOC1	JLOC1_2865.1	2356	8e-25	413 - 472	100	60 / 60	plus
Harvest21	ABC23087	442	3e-25	376 - 435	100	60 / 60	plus
Harvest21	ABC22102	729	3e-25	527 - 586	100	60 / 60	plus
Harvest35	U35_25070	444	3e-25	376 - 435	100	60 / 60	plus
Harvest35	U35_13342	729	3e-25	527 - 586	100	60 / 60	plus

Contig Sequence (444 bp)

>U35_25070 444 Hv_44K_v2
GCGCAAGGTGGTGAGAGAGAGGCGAGGGGGGAGAGGGAGCGAGCGAGAGCCGAGACCGAG
AGAGATCCAATCCAATCCAGCCCAGTCCCCTCCCCATACCCCGCCTCCGCCTCCGCCTCC
GCCTCCTCGATTCGCTCCGGTTCCGCGCTCGCTTGCTCAGGCGAGGCAGGTTCGGCGGCG
AGGGGGATCGGAATGGGCGCGCGGGTGTCCAAGGCCACCTCCTGCTGCTGCCTCCGCGGG
CAGCTCCACGGCAGCACCCGCCTCGACGACCCCGGCTCCGAGGAGGACGAGCAGGGGGAG
GCCTACGAGCTGCCGGCGTTCCAGGAGTACACCTTCGAGCAGCTGCGGCTCGCCACGGCC
GGCTTCGCCGTCGACAACATCGTGTCCGAGCATGGCGAGAAGGCGCCCAACGTCGTCTAC
AAGGGGAAGCTCGACGCCCAGCGC

Homology of Contig U35_25070 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None