barSeed - Barley Seed Development Database

Probe CUST_14934_PI390587928

Source Contig U35_37055

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14934_PI390587928	Hv_44K_v2	ATCAATTCTGCAGTTAAAGGAGCGCCTAGAAAAAGAAGTACTGGAGGAGTCCCCTCAAAA	412	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251516.1	1828	2e-24	1223 - 1282	100	60 / 60	plus	ABC18266
MLOC	MLOC_21331.4	394	2e-24	208 - 267	100	60 / 60	plus	ABC18266
MLOC	MLOC_21331.3	1350	2e-24	727 - 786	100	60 / 60	plus	ABC18266
MLOC	MLOC_21331.1	704	2e-24	432 - 491	100	60 / 60	plus	ABC18266
MLOC	MLOC_21331.2	1041	2e-24	418 - 477	100	60 / 60	plus	ABC18266
JLOC1	JLOC1_14806.1	1054	8e-25	410 - 469	100	60 / 60	plus
Harvest21	ABC18265	475	3e-25	413 - 472	100	60 / 60	plus
Harvest35	U35_37055	475	3e-25	413 - 472	100	60 / 60	plus

Contig Sequence (475 bp)

>U35_37055 475 Hv_44K_v2
GATTTAAGAAGAAGGAAGTGAGCCCTGGAGATTATAAGGTTGTAGATCTTGATTTTCCGA
ACACGACCGAGAGTTACAGGTTATACTGCATGAGAGCCATCGCTGGCGACATCAAAGAGT
CAGTTTGCAGAGTTCCAGATACCCCCTTTGATGAAGTGGCATATGCAAATGTTCCTACAA
CTTCATATGAGCTTCCAGATGGGCAAACTATTGAAGTTGGTGCAGATAGATTTAAGATCC
CTGACATTTTGTTCAACCCATATCTTTCCCAGACTATTCCTGGAGTCGATGGATTTGGAG
ATTCCACTTCAATTCGTGGACTTCCACGAATGGTCCTTGACAGTATAAACAGATGTGATG
TTGATATTCGCAAGGAACTACTCAGCAACATCTTGCTTTCTGGTGGCTCGTCATCAATTC
TGCAGTTAAAGGAGCGCCTAGAAAAAGAAGTACTGGAGGAGTCCCCTCAAAATGC

Homology of Contig U35_37055 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g04280.2	444	6e-76	protein\|actin, putative, expressed
Brachypodium v1_2	Bradi1g77930.1	444	8e-82
Arabidopsis v10	AT1G18450.1	441	2e-57	\| Symbols: ATARP4, ARP4 \| actin-related protein 4 \| chr1:6348199-6351766 FORWARD LENGTH=441