barSeed - Barley Seed Development Database

Probe CUST_14926_PI390587928

Source Contig U35_49035

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14926_PI390587928	Hv_44K_v2	GGGATAACACCACCACGCTGGACTGGAAGATGCTCTGTAAATGTTCGTTTGTAGATGTAA	0	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	10.991	6.045	1.365	0.687	0.433	0.898
Raw	171.165	150.393	30.451	25.961	4.821	12.129

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC50990	725	3e-25	1 - 60	100	60 / 60	minus
Harvest21	ABC09212	348	8e-21	259 - 316	97	57 / 59	plus	ABC09212
Harvest21	ABC09211	1630	8e-21	1470 - 1527	97	57 / 59	plus	ABC09211
Harvest35	U35_49035	725	3e-25	1 - 60	100	60 / 60	minus
Harvest35	U35_3271	1677	8e-21	1517 - 1574	97	57 / 59	plus

Contig Sequence (725 bp)

>U35_49035 725 Hv_44K_v2
TTACATCTACAAACGAACATTTACAGAGCATCTTCCAGTCCAGCGTGGTGGTGTTATCCC
ATCTCTGAATGCAGAAACAATGAAGCAGTGAGGGGAATGACAGGCTGCGTGCGTGGTGCT
ACTATGATAATACATAACTTATTTACATGGGTTTCACTGGGCGCTGTGTCTTCTTCGCTC
GTCCGACAGACCGGGCTGCTGTTGCTGCTGCTTCGACAAGACGACGTTTCCATGGAGGTC
CATCTTGTACCGCAGCTCGGCGTAGTCCATAACGATCCTGCAGCTGCTCCAGGCCTCCGC
GTGCATGCTCACGCCCAGGTAGGTTATGTGGTCTTGAATGCTGTTGCCGCTCACAGATCT
GGAGAAGGCGAACCATGTCAAGCAAGAGCAAGAACCTTGTTAACAAAGAGCAGAAATCAT
GCAGTGCGAGGCAGAATTCACAGGACATGGTGGTGGAGGGAGAGAGGGAGGGACCTGCTG
CATGCAGGGTCTTCTCCGGAGTCGTCGCAGATCTTCTCAACCGTGTATACCAGGCTCCCG
AGCCCGACATTGTGGACCCATACCTGAAGGAAGGAGAGGAACAGCATGGCATTATGCAGT
GGAACCTGATGGAATGGGTATACAGGGGAAGGTTGGATTCCCAGATAGAATGGCACTATG
TGTAAGTATTTTTCAAGCCATTATCTATTTGCATGTAGTGAGTATGAATGAACAGGTGTA
AATTG

Homology of Contig U35_49035 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None