barSeed - Barley Seed Development Database

Probe CUST_14914_PI390587928

Source Contig U35_25088

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14914_PI390587928	Hv_44K_v2	TCTTGATGAAGAGGAGTTTGGAGAGAATTCTGCCAGCAGAGCTCACTATGGCGAATTTAC	508	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249235.1	1328	2e-24	554 - 613	100	60 / 60	plus	ABC24845
MLOC	MLOC_81901.2	1043	2e-24	720 - 779	100	60 / 60	minus	ABC24845
MLOC	MLOC_81901.1	981	2e-24	746 - 805	100	60 / 60	minus	ABC24845
JLOC1	JLOC1_54472.1	1045	8e-25	180 - 239	100	60 / 60	plus
Harvest21	ABC22214	645	3e-25	509 - 568	100	60 / 60	plus
Harvest35	U35_25088	645	3e-25	509 - 568	100	60 / 60	plus

Contig Sequence (645 bp)

>U35_25088 645 Hv_44K_v2
GTCGAGGACGGCGGCGGCGACAGCAGATCGAGGACGGCGGCGGCGACAGCAGATCGACTG
AACAAGGTTCTTGCGTTTGTTGCTATCTTATGGACGACAAGAGTAACGTGAAGAAGGAAA
TAGATGGCTCCCTTCCAGCCCGTCCTCGCAAAGGAGGACTCAAATTCGCGCCCAAGAAGC
CTCCGAAGAAACCTGCAAAGGTTGTCCCAAAAACGGAGCCTGCTGAGGAGAGCAAGGATG
ATATCATTGACAAGGAGTTGTTGATGAAACTCAAGACATCGCAGATCACCGATCCCTTTG
GAAGAAGACCCAAGATTGAGAAAAAAGAAATCAATACTCAGGTTGCATTTGGGCAAGGGA
ACTCTTCCTATGCAAGATCTTTTCCTACGCGGAATTATTCGGCAGCGCCAAAAGCACCAA
AAGAATACGTCGATCCATGGGACTATACCCATAGCGACTATCCTATAACTCTCCCACTTA
GGAGGCCCTACTCTGGAGATCCTGAGATTCTTGATGAAGAGGAGTTTGGAGAGAATTCTG
CCAGCAGAGCTCACTATGGCGAATTTACGGCAGCAGATGAACTTGGATTAATGGATTGGT
CCGACACACCACAGTTGCTCCTCTTCCAGTTACCTGTGTCTCTTC

Homology of Contig U35_25088 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g32350.1	277	3e-68	protein\|RNA polymerase III RPC4 domain containing protein, expressed
Brachypodium v1_2	Bradi2g34200.1	310	1e-93
Arabidopsis v10	None