barSeed - Barley Seed Development Database

Probe CUST_14909_PI390587928

Source Contig U35_37068

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14909_PI390587928	Hv_44K_v2	AATTCGATACTGTGGTTCATACAGTGCAAATGCAACCTGCTGCTGCAGCTGTGATAAGCA	391	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_209.1	3009	2e-24	710 - 769	100	60 / 60	minus	ABC19281
JLOC1	JLOC1_141.2	2995	8e-25	2241 - 2300	100	60 / 60	plus
JLOC1	JLOC1_141.1	2989	8e-25	2235 - 2294	100	60 / 60	plus
Harvest21	ABC32678	461	3e-25	392 - 451	100	60 / 60	plus
Harvest35	U35_37068	461	3e-25	392 - 451	100	60 / 60	plus

Contig Sequence (461 bp)

>U35_37068 461 Hv_44K_v2
GCTTCAGGCAGCGAGCTGGCAAGGATAGTTTGCATGGCAGTTTTCCGGCATCTAAGATTT
ATATTCGCCAATTTGCCCTCTGATAGCAGCATAGCTGGGACCACAACTAAACTTGTAAGT
ACCGTATCCACCTGTGTTGTTCGGATGGACTTGAGTGGGCTCAGTGCTTGTCTTGCAGCT
GTTGCGTGTTCGTCACAGCAACCACCTCTTCGACCTCTGGGATATGCTGCTGGCGATGGG
GCTTCTGTCATCATAAAGTCTGTACTGGACAGAGCTACAGAGCTTCTTACTGATCAACAT
GTGGCCTCTGCCTACAGCATGCAGAACCGAGCTCTATGGCAGGCATCATTTGATGCCTTC
TTCGGGCTGCTTATGGGGTATTGCATGAGTAAATTCGATACTGTGGTTCATACAGTGCAA
ATGCAACCTGCTGCTGCAGCTGTGATAAGCAGGGAAACACC

Homology of Contig U35_37068 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g19330.2	831	7e-68	protein\|expressed protein
Brachypodium v1_2	Bradi4g36450.1	723	6e-74
Arabidopsis v10	None