barSeed - Barley Seed Development Database

Probe CUST_14907_PI390587928

Source Contig U35_49040

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14907_PI390587928	Hv_44K_v2	TGTTTCACGGTTCCTAAACTTTAGTTGCATGAAAATGAATTGTGCGTTGGTCCGAAAAAA	11	GeneList: mediumpurple3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.677	6.662	0.648	0.449	1.027	0.915
Raw	55.338	65.189	5.302	3.413	2.952	2.984

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71615.5	1324	9e-22	1264 - 1318	100	55 / 55	plus	None
MLOC	MLOC_71615.3	1284	9e-22	311 - 365	100	55 / 55	minus	None
MLOC	MLOC_71615.4	673	9e-22	17 - 71	100	55 / 55	minus	None
MLOC	MLOC_71615.1	1645	9e-22	534 - 588	100	55 / 55	minus	None
MLOC	MLOC_71615.2	2093	9e-22	417 - 471	100	55 / 55	minus	None
JLOC1	JLOC1_47611.2	2325	5e-22	1591 - 1645	100	55 / 55	plus
JLOC1	JLOC1_47611.1	2196	5e-22	1462 - 1516	100	55 / 55	plus
Harvest35	U35_49040	484	3e-25	12 - 71	100	60 / 60	minus
Harvest35	U35_48857	531	1e-23	7 - 66	98	59 / 60	minus

Contig Sequence (484 bp)

>U35_49040 484 Hv_44K_v2
TTTTTTTTTTTTTTTTTCGGACCAACGCACAATTCATTTTCATGCAACTAAAGTTTAGGA
ACCGTGAAACACAAAAATATCGATCGTGGCAGCAAATATCGGATGATCATGACGTGAAGA
GCTGGCTCCCGAGGGTGATGATGGCGGTGCCGTCGCCCATGACGGTCGTTAGTGTCATCT
CCTTCTCCAGGATGCGGTCAAGCTCCGCCGCGACCAACCGCATCTTGGGCCGCCTCCTCA
CCGCCGACGGGCTCAGACACTGCAACGTCAGGCCGACCAACTCCTTCATGCCCTCCGAGG
TGAAGCTGCCACCAAGCCTCGGGTCCGCCACCTCGTCTCCCGATGCCTCCAGCAGTGATG
AGCTCGAGAAGAAAAACCCCAAAGCTGTACACGTCGCTGCTCGCAGAGAGCTGTGCCAAG
GAATGTGCCTCTGGATCCTGGTAGACGCCGGAACGGAACCCATTGAGCGGCGAGCCGGGG
TCCT

Homology of Contig U35_49040 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None