barSeed - Barley Seed Development Database

Probe CUST_148_PI415269222

Source Contig TA44147_4513

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_148_PI415269222	Hv_44K_v2	GCTGGTGGAGGAGGAACATTTAAGAAGAACATCTTCAATGGTGATCTTCAAATTTCTTCA	1079	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.761	1.804	3.906	2.231	0.754	0.572
Raw	309.956	1165.503	2174.070	1864.476	232.324	190.745

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_24253.1	2178	2e-23	2121 - 2178	100	58 / 58	plus	ABC14132 ABC14133
JLOC1	JLOC1_16687.1	2161	4e-23	2105 - 2161	100	57 / 57	plus
Harvest21	ABC14133	496	3e-25	421 - 480	100	60 / 60	plus	ABC14133
Harvest35	U35_5774	1146	3e-25	1071 - 1130	100	60 / 60	plus

Contig Sequence (1139 bp)

>TA44147_4513 1139 Hv_44K_v2
CGGCACGAGGAAGGAGGCCGTAGACGCCAACACCCTGCTGCACTACACCAACGTCTTCGA
CGCCGTCGTCGACGCCGCCTACTTCGCCATGGCGTACCTCAACGTCACCAACGTGCCGGT
CATGGTGACAGAGACCGGGTGGCCGCACAAGGGCGACGCCTCCGCCGAGCCGGACGCCAA
CAACGACAACGCCGACACGTACAACAGCAACCTCATCCGGCACGTCATGAACGTCACCGG
CACCCCGAAGCACCCTGGGGTGGCCGTGCCGACCTTCATCTACGAGCTGTACGACGAGGA
CACCCGCCCCGGGACGGCGTCCGAGAAGTACTGGGGCCTGTTCGACATGAACGGCATCCC
GGCGTACGCGCTGCACCTGACGGGCTCCGGCGTGCTGCTAGCCAACGACACGACGAACCA
GACATACTGCGTGGCGCGGGAGGGCGCGGACGAGAAGATGCTGCAGGCCGCGCTCGACTG
GGCGTGTGGCCCGGGGAAGGTGGACTGCTCTGTGCTGACGCAGGGGAAGCCGTGCTATGA
CCCGGACACCGTGGAGGATCATGCCACGTACGCGTTCAATGCCTACTACCATGGGATGGG
GATGGGCTCGGGGACGTGCTACTTCTCCGGAGTCGCCGTGATCACGACCACCGATCCGAG
CCATGGATCTTGTGTTTATGGTGGGAAGAACGGCAGCGCGTTGCTGAACGGAACCTCGCT
GGCGCCGTCGTCCAACTCCACCACGGACTCCGGCTCCTGGCGGGCAGCCGGCGACGTCAG
GTCGTTCGTCCGGATCGTCGTCACCGCGCTGCTCTTGAGCGCCGTCGCCCTGTTGTAGGA
TGTGAGTAGTAGGAAGTCAGGCAGAGGCAGCAGAGTAGGGAAGCCGTGCTATTAGTGACG
TGAGAGATTCTTTTTTCGTTGTCAAGTAGAATTGGCCTCGGTGCTGTTGGGTGGCAAGTG
TCTTTCCAAATGGAACGGGATGTGGTTATGTTGGCTCTTAAGATCCGAGCTCGTACTCTG
GTATTGGTTGGGAATTTGGGATTGTATTGGATGTTTGGATCATTGGATGGATGTCATCTG
CTGGTGGAGGAGGAACATTTAAGAAGAACATCTTCAATGGTGATCTTCAAATTTCTTCA

Homology of Contig TA44147_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g12140.3	472	6e-161	protein\|glucan endo-1,3-beta-glucosidase precursor, putative, expressed
Brachypodium v1_2	Bradi1g69610.1	499	1e-164
Arabidopsis v10	AT2G01630.1	501	2e-108	O-Glycosyl hydrolases family 17 protein \| chr2:279541-281955 REVERSE LENGTH=501