barSeed - Barley Seed Development Database

Probe CUST_148_PI390587928

Source Contig U35_45868

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_148_PI390587928	Hv_44K_v2	GACGAGGTCTGGTTGGAGAGCTTGGCTAGTCCAAACCTATCCATGCCTACCGCCCGTCGT	105	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59339.1	2972	2e-24	2812 - 2871	100	60 / 60	plus	ABC08523 ABC14249
MLOC	MLOC_59339.2	2396	2e-24	2255 - 2314	100	60 / 60	plus	ABC08523 ABC14249
MLOC	AK360828	1943	7e-23	1729 - 1788	98	59 / 60	plus	ABC08523 ABC14249
JLOC1	JLOC1_38612.1	1495	8e-25	1162 - 1221	100	60 / 60	plus
Harvest21	ABC45233	165	3e-25	106 - 165	100	60 / 60	plus
Harvest35	U35_45868	165	3e-25	106 - 165	100	60 / 60	plus

Contig Sequence (165 bp)

>U35_45868 165 Hv_44K_v2
GTGTTCCGGGAGGCGAGCTTTGGGCACGGCCGGCTGAGGATCGTGGACGAGACGAGCGCC
GTCTGGACATGGCACCGCAACGACGACGAGTACGCCACCGTCCGCGACGAGGTCTGGTTG
GAGAGCTTGGCTAGTCCAAACCTATCCATGCCTACCGCCCGTCGT

Homology of Contig U35_45868 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None