- Probe CUST_14899_PI390587928
- Source Contig U35_49049
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14899_PI390587928 | Hv_44K_v2 | CGGCCTGACCGGACCGGAGCGGCGATGGCAACTCCACCGCAACTTTTTGAAAGAGAACAG | 45 | GeneList: yellowgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.747 | 2.087 | 1.765 | 1.267 | 0.690 | 0.574 |
| Raw | 114.042 | 480.795 | 354.378 | 392.806 | 75.475 | 69.633 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK358868 | 1152 | 2e-24 | 1058 - 1117 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_3508.1 | 802 | 2e-24 | 174 - 233 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_2108.1 | 774 | 8e-25 | 174 - 233 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_49049 | 461 | 3e-25 | 46 - 105 | 100 | 60 / 60 | minus |
Contig Sequence (461 bp)
>U35_49049 461 Hv_44K_v2 TTTTTTTTTTTTTTTTTGAGAAATAAAATAAAATTATGTTTAAAACTGTTCTCTTTCAAA AAGTTGCGGTGGAGTTGCCATCGCCGCTCCGGTCCGGTCAGGCCGACAGGGGCTCCGGCG CGAAGAGGTCGTCGAGGTCCGCGAGCTCCACGAAGTCCGCCGAGGGGTCCCACCTGCTGC TGCACGTCGCGGGGAGGCAGAACTGCATCAGGTTGTTCAGGGAGGTCTCCTCGTCGACGA ATCCCATGCCGAACGCTGCCGTCACCTCCTCGTCCGCGTTCACCAAGGACCAGCTGGTGG TCGCCGCCGACTGAGAGGCCGCCGTGGTGGAGGGCGACGGGGGAGAGGCCGCCGTGGTGG AGGGCGACGTAGGAGAGGCCGCCGTGGTGGAGGGCACCGGGGGAGAGGCCGCCGTGGCGA AAAGCGACGGAGGAGAGACCGCCGTGGTGGAGGGCAACGGG
Homology of Contig U35_49049 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |