- Probe CUST_14897_PI390587928
- Source Contig U35_25091
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14897_PI390587928 | Hv_44K_v2 | AGTCGTGTCGTCCACATCACAATGCCACCCTGCTTGTACAACCACGGGAAACCAAGGCCT | 21 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.914 | 1.064 | 0.968 | 0.599 | 1.262 | 1.422 |
| Raw | 3.043 | 7.140 | 6.252 | 5.420 | 3.169 | 5.006 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_54267.1 | 2297 | 2e-24 | 1996 - 2055 | 100 | 60 / 60 | minus | ABC13318 |
| JLOC1 | JLOC1_34923.1 | 2257 | 8e-25 | 139 - 198 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC22347 | 416 | 3e-25 | 22 - 81 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_25091 | 417 | 3e-25 | 22 - 81 | 100 | 60 / 60 | plus |
Contig Sequence (417 bp)
>U35_25091 417 Hv_44K_v2 CAGCACGCTCTTTGGCAGTCGAGTCGTGTCGTCCACATCACAATGCCACCCTGCTTGTAC AACCACGGGAAACCAAGGCCTCTTCTCGTCCTCCTCGCAGTCACCCTCACACTACTCGCC GCCGCCGCCGGCGCCACGGCCGACGATGTCTCCTCCGGCACGGTCCCCTTCTACCCCTCC GCGGAGGCTGCCGCGGCCGCGCACTGCGACGGCACGCTGTACCCGGAGCTCTGCCTGTCG ACGCTCGCCGACATCCCGGACCTCCACAAGAAGCCGCTCCCGGACGTGATCTGCGCGGCC GTGAACCGCACCGAGACCGAGGTGACCACCATGTCCGCCAACTGCTCCGGCTACCTCCGG GAGAGGTCCCTCAGCGGGCGCGACCACCTCGCCGTCACGGACTGCATGGAGCTCCTA
Homology of Contig U35_25091 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |