barSeed - Barley Seed Development Database

Probe CUST_14892_PI390587928

Source Contig U35_25098

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14892_PI390587928	Hv_44K_v2	ATTATATTTTTGATTCGGCCCTGGCTGCCTAGAGCTTATGACCGTCTGATATTGGCTGCA	576	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK377088	2180	2e-24	1469 - 1528	100	60 / 60	plus	ABC33434
Harvest21	ABC33433	452	3e-25	303 - 362	100	60 / 60	plus
Harvest35	U35_25098	726	3e-25	577 - 636	100	60 / 60	plus

Contig Sequence (726 bp)

>U35_25098 726 Hv_44K_v2
CATGGCTGTTTCGGGGATGGATTATTTCCTTGGAGTGCAGAGTCACCTAGGGACGATGAT
GCATCGGCAGCGCTGAAGCAACAACTGCTTATGAAAACAAGGACTTCCAAGCCCAAGACC
AAGGTATATGTATATCAGTTCGAGACTCGTTTTATGGTTCCCGGAGTTGATCAGAGCACT
GCTGAAAACAACGGCTCTGAAATGGTGAAAATTGGGCTCCATGTTCTTACAAGATTGAGC
GAGGACTTGGATGAGAGGAGGTTATATTCAATACTGAAATCTGTAGTTGCCAGGTATAAT
GGCAACCAGCTTATAACAGAGCAAGAGCGCGTGAGGTGGGAGATCAAGCAGATACTGACA
GATCAAGCACAGAACTTTGGAATTGCCATTCATGATGTCTACATCGTAATCCCAAGCTTT
GAGAAGATATTTACTCAGGACATTGAAGAGAAAGAGGTGACTACACAAGGAGTTGAGCAA
GATAACAGGAATGCAATGATCAGGTCACAGGAGGACGACCAGATCTGGAACAAGAGGCAG
ATTGTTTACATTTTTTATCTAGGTACTGCGCTGGGCATTATATTTTTGATTCGGCCCTGG
CTGCCTAGAGCTTATGACCGTCTGATATTGGCTGCATTTGCTATAATTTGGGGGGGCGGG
CAGCGTGGGCTTGCCCGTTGGAATTTTCGGCACCTCCAGACTTGAGAAAAACTGCAGTCG
GCATGT

Homology of Contig U35_25098 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None