barSeed - Barley Seed Development Database

Probe CUST_1488_PI390587928

Source Contig U35_42247

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1488_PI390587928	Hv_44K_v2	TCTCCCATTGCCTGAAAGGTTCAGATAATGGTGGTGGTATTCTTGTCCTTGGTGAAATCG	579	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_22428.2	1009	2e-24	820 - 879	100	60 / 60	minus	None
MLOC	MLOC_22428.3	1055	2e-24	865 - 924	100	60 / 60	minus	None
MLOC	MLOC_22428.1	1072	2e-24	887 - 946	100	60 / 60	minus	None
JLOC1	JLOC1_15555.1	1540	8e-25	400 - 459	100	60 / 60	plus
Harvest21	ABC37794	642	3e-25	580 - 639	100	60 / 60	plus
Harvest35	U35_42247	642	3e-25	580 - 639	100	60 / 60	plus

Contig Sequence (642 bp)

>U35_42247 642 Hv_44K_v2
GCGTCGTCGCCGGCGTCGTCGACTTCCCCGTCGAAGGCTCCGCCAACCCCTACATGGTCG
GGCTCTATTTTACACGTGTAAAATTGGGAAACCCCGCGAAGGAATACTTTGTCCAAATTG
ACACTGGCAGTGATATCTTGTGGGTGGCTTGCAGCCCTTGTACAGGTTGTCCGACATTAA
GTGGGCTCAATATTCAGTTGGAATTCTTCAATCCTGATTCTTCATCAACATCATCCAGGA
TACCATGCTCAGATGATAGGTGTACATCTGCCCTGCAGACAGGGGAAGCACTCTGCCAAC
CCTCGGACTCCCCAAGCAGCCCATGCGGTTACACTTTCACGTATGGTGATGGAAGTGGCA
CGTCAGGATACTATGTGTCCGACACTATGTATTTCGACACTGTCATGGGGAATGAGCAGA
CTGCCAATTCTTCTGCCTCCGTCGTTTTCGGATGTAGCAACTCACAGTCAGGTGACCTGA
TGAAGACAGATAGGGCAGTTGATGGAATTTTTGGGTTTGGACAGCATGAACTGTCTGTCA
TTTCACAGCTGTACTCTCTTGGTGTATCCCCTAAAACATTCTCCCATTGCCTGAAAGGTT
CAGATAATGGTGGTGGTATTCTTGTCCTTGGTGAAATCGTTG

Homology of Contig U35_42247 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g56930.2	411	1e-118	protein\|eukaryotic aspartyl protease domain containing protein, expressed
Brachypodium v1_2	Bradi2g51630.1	507	2e-129
Arabidopsis v10	AT5G22850.1	493	2e-74	Eukaryotic aspartyl protease family protein \| chr5:7633717-7636298 REVERSE LENGTH=493