barSeed - Barley Seed Development Database

Probe CUST_14878_PI390587928

Source Contig U35_49055

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14878_PI390587928	Hv_44K_v2	GACCTGTCGCAGCTCTTCGCGGTTGCGGTTTTTGGAAAATGGTCGGCTAGCTCCAAAAAA	11	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.742	1.538	1.063	0.846	0.397	0.532
Raw	1725.417	2335.056	1466.773	1838.972	297.762	437.635

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_49055	309	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (309 bp)

>U35_49055 309 Hv_44K_v2
TTTTTTTTTTTTTTTTTGGAGCTAGCCGACCATTTTCCAAAAACCGCAACCGCGAAGAGC
TGCGACAGGTCACGGCGACGCGGCCGAAAATGCTGGAACCAGCCAGCCACTTTGCTGGAA
CAGGAGGGGAGGGGATCGGATCTACACAACACTGACGATAGCCGTCCACCCACTACCTAC
TCGGCTGCTCGACACGATTCGTCGCGAATACGCGATGTCTTTGGATGGAAGGGACCACGA
GTCCACGGCCGATTGATGTCAGCGACATAAAGCGCGATTCATTATTATCCCTACGACGAG
TCGTCGTCG

Homology of Contig U35_49055 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None