barSeed - Barley Seed Development Database

Probe CUST_14875_PI390587928

Source Contig U35_37080

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14875_PI390587928	Hv_44K_v2	CCAAAAGCTGTCTTTCTGTTTACAGTGAGTGTCAGTAACACTGTTGTGGCCCTCAAAAAA	519	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54442.1	1450	2e-24	1342 - 1401	100	60 / 60	plus	ABC32694
MLOC	MLOC_54442.2	1453	2e-24	1345 - 1404	100	60 / 60	plus	ABC32694
JLOC1	JLOC1_35043.2	1470	8e-25	1253 - 1312	100	60 / 60	plus
JLOC1	JLOC1_35043.1	1560	8e-25	1343 - 1402	100	60 / 60	plus
Harvest21	ABC32694	611	3e-25	520 - 579	100	60 / 60	plus	ABC32694
Harvest35	U35_37080	611	3e-25	520 - 579	100	60 / 60	plus

Contig Sequence (611 bp)

>U35_37080 611 Hv_44K_v2
GCAGCTTCTGTGTTGCCCCGTGGATTTGCCACCCCAGGCGCTGGACTAGTCCGCTGCCTT
TTCTGTGAGCATCAAGGGATCAGGATTGTGCACCCGGCCTTGGAGGGATTCCATGGGCAC
GAGGCCGAGTTCGAGAAGATGGTCCGCGGAGAAGATCTATACAACAATGACTACTATCCG
GAGGGCGACATCGAGCCCTACACCAACCATCAAATCTTAGAGTACAGTGAAGATGTTGCG
AAGTGGGTGCACGAGGGACTCGACGAGGACTGCATGTACCTCAGCAGCAATGACTTCACC
ATCGAGAAAGATGATAGCGATGAAAGTGAGGAGGTTGACGACCTGGAGTAATATGTAGCA
AAGATTCTAGTGATGGTGAATAATTTATTTTACTGTGTTGGCTGTAGTGTTCGCTTGCCT
GCACTGACGATCCTCTATTAAGTAGCAGCTAGTTAGTTTATTTGTTTAGTTATAGGATTA
GCAAATCTGTCGACCTAACAAGTAGGTTAGGTTCTCGAACCAAAAGCTGTCTTTCTGTTT
ACAGTGAGTGTCAGTAACACTGTTGTGGCCCTCAAAAAAAAAGAGTAACATTCTAAAAAA
AAAAAAAAAAA

Homology of Contig U35_37080 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None