barSeed - Barley Seed Development Database

Probe CUST_14871_PI390587928

Source Contig U35_37084

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14871_PI390587928	Hv_44K_v2	GAAAACTGGTCCCTGGTGCTCCACAGTGTGTCGGTCGCTATTGATCTTGGATGCAACTGT	558	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360070	863	2e-24	578 - 637	100	60 / 60	plus	ABC05990
MLOC	MLOC_58791.1	512	2e-24	334 - 393	100	60 / 60	plus	ABC05990
JLOC1	JLOC1_38224.1	810	8e-25	320 - 379	100	60 / 60	plus
Harvest21	ABC05991	618	3e-25	559 - 618	100	60 / 60	plus
Harvest21	ABC05990	821	3e-25	578 - 637	100	60 / 60	plus	ABC05990
Harvest21	ABC37941	540	1e-23	192 - 251	98	59 / 60	minus
Harvest35	U35_37084	618	3e-25	559 - 618	100	60 / 60	plus
Harvest35	U35_16581	838	3e-25	578 - 637	100	60 / 60	plus

Contig Sequence (618 bp)

>U35_37084 618 Hv_44K_v2
GGACGAACGGTGAGGTCGAAATCCCGAGCGAAGAGAAAGGCGGACAGGAAGATGGCGGCG
GCAGCACTACGTCCGGCGATCCTCCGCCACATCCGACTCTCCCCCGCCATGGCGGCCCCT
CTCGTCGGCGCCACCGCGGCCGGCCAGCCCCTCGCCCTCGCGCGGTGGCTCGCGCGGCCA
ATGTCCTCCCACGACGCCCACCTTACCCGCGACGAGGTCGTCGACCGCGTCCTCGACGTC
ATCAAGTGCCACCCCAAGGTCGACCCCTCCAAGATGAATCGCCGTGGCAGGTGACCCCCG
AGGCGCACTTCGAGAAGGATCTGGGTCTGGACAGCCTGGACACGGTGGAGGTGGTGATGG
CGATCGAGGAGGAGTTCAAGCTCGAGATCCCCGACTTGGAGGCCGACAAGATCAACTCGC
TTCCGCTCGCCATCGAGTACGTTGCCAACCACCCCATGGCCGGCTGAGTGCCCGCCCTTC
CGATTGTTGACCGCGCCAGGGTGAGGATTTTTCTTGTTTCTGTTNCGGGATGATGAATAA
TTGACTGGAGTTGTTCAGGAAAACTGGTCCCTGGTGCTCCACAGTGTGTCGGTCGCTATT
GATCTTGGATGCAACTGT

Homology of Contig U35_37084 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None