barSeed - Barley Seed Development Database

Probe CUST_14865_PI390587928

Source Contig U35_49062

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14865_PI390587928	Hv_44K_v2	CACATGACTAAAATAGTGGCGCTAAAACTTGCTAGCCTCATTCATTTTTGATCCAAAAAA	11	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.852	1.859	2.009	0.998	0.327	0.375
Raw	121.477	406.905	386.607	307.134	33.874	42.020

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9122.1	1308	9e-22	1 - 55	100	55 / 55	minus	None
MLOC	AK357808	2754	3e-21	2701 - 2754	100	54 / 54	plus	None
JLOC1	JLOC1_5986.1	1300	6e-21	1248 - 1300	100	53 / 53	plus
Harvest35	U35_49062	341	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (341 bp)

>U35_49062 341 Hv_44K_v2
TTTTTTTTTTTTTTTTTGGATCAAAAATGAATGAGGCTAGCAAGTTTTAGCGCCACTATT
TTAGTCATGTGATTAAAACTTATCCAAGCACCTCCAAGTCTCGAGTTGCAAATAAGACTT
GCCTCCACCTATACAAAGCATTCATGGATGGATAACAGTACTACTCCTACCTTTGCAATT
AAATCAAAGAATTTCTTAAAATATCTCTCTCTGGGCTAAGCTAAGCTAAAAATTGCATCA
TTATTTTTTCTTCTCCTCGTTTTCTCCGGTTGCTCTGCTGTCTCTGCCTTCATTGGTCTC
TGCCTACTCATTGGTCCTTGCTCGCAGAAGCCACGTGAGCT

Homology of Contig U35_49062 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None