barSeed - Barley Seed Development Database

Probe CUST_14860_PI390587928

Source Contig U35_49067

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14860_PI390587928	Hv_44K_v2	TTTGGGAGCAAACTCGTATCCTCTATCAGGCGTAGACCTGTTGATCTGATGATCAAAAAA	11	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.995	1.459	1.874	1.111	0.352	0.379
Raw	336.023	759.505	837.787	796.819	86.387	101.797

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77108.1	1482	9e-22	43 - 97	100	55 / 55	minus	None
JLOC1	JLOC1_51430.1	1521	5e-22	1387 - 1441	100	55 / 55	plus
Harvest35	U35_49067	319	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (319 bp)

>U35_49067 319 Hv_44K_v2
TTTTTTTTTTTTTTTTTGATCATCAGATCAACAGGTCTACGCCTGATAGAGGATACGAGT
TTGCTCCCAAATAATGAGGTCTAGATAACATTAGCAACACTACATCTGAACTGCATCGCC
GAACAACCCAACACAAAACAGAACACTTAAGATCTGACTGTGAAAGCAGCAATCCGTCTT
GCCGCTAGCAACACTACCATCTCATACATCTTGCCTAATCTCCCTCACTACGAGCTCGCC
GACACGCCACGGACGCCCGATCGGCCGCTCGCCACGCTGCCGCTGCCGCGGTGAGCGCTG
CGTCCACGGTGCGCATTGA

Homology of Contig U35_49067 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None