- Probe CUST_1485_PI390587928
- Source Contig U35_30270
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1485_PI390587928 | Hv_44K_v2 | GCGGCGAGGGATGGCGCGTCCTGTGCTCCGGCTGTCCGCCGCGGGGGGTGATGGGGAGGT | 270 | GeneList: darkolivegreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.537 | 0.751 | 0.967 | 1.158 | 1.023 | 1.470 |
| Raw | 50.528 | 98.860 | 123.776 | 223.170 | 72.002 | 112.273 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK363740 | 1730 | 2e-24 | 259 - 318 | 100 | 60 / 60 | plus | ABC20945 ABC38637 |
| MLOC | MLOC_75366.3 | 2602 | 2e-24 | 1653 - 1712 | 100 | 60 / 60 | minus | ABC20945 ABC38637 |
| MLOC | MLOC_75366.7 | 1986 | 2e-24 | 1391 - 1450 | 100 | 60 / 60 | minus | ABC20945 ABC38637 |
| MLOC | MLOC_75366.2 | 1753 | 2e-24 | 1474 - 1533 | 100 | 60 / 60 | minus | ABC11698 ABC20945 ABC38637 |
| MLOC | MLOC_75366.8 | 2019 | 2e-24 | 1424 - 1483 | 100 | 60 / 60 | minus | ABC20945 ABC38637 |
| MLOC | MLOC_75366.5 | 1594 | 2e-24 | 1237 - 1296 | 100 | 60 / 60 | minus | ABC11698 ABC20945 ABC38637 |
| MLOC | MLOC_75366.6 | 1798 | 2e-24 | 1441 - 1500 | 100 | 60 / 60 | minus | ABC20945 ABC38637 |
| MLOC | MLOC_75366.4 | 1966 | 2e-24 | 1518 - 1577 | 100 | 60 / 60 | minus | ABC20945 ABC38637 |
| MLOC | MLOC_75366.9 | 1572 | 2e-24 | 1243 - 1302 | 100 | 60 / 60 | minus | ABC20945 ABC38637 |
| MLOC | MLOC_75366.1 | 1473 | 2e-24 | 1118 - 1177 | 100 | 60 / 60 | minus | ABC20945 ABC38637 |
| JLOC1 | JLOC1_50274.10 | 1788 | 8e-25 | 281 - 340 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50274.9 | 1711 | 8e-25 | 271 - 330 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50274.8 | 1575 | 8e-25 | 271 - 330 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50274.7 | 1611 | 8e-25 | 271 - 330 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50274.6 | 1434 | 8e-25 | 268 - 327 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50274.5 | 1492 | 8e-25 | 255 - 314 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50274.4 | 1558 | 8e-25 | 221 - 280 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50274.3 | 1104 | 8e-25 | 4 - 63 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50274.2 | 1162 | 8e-25 | 2 - 61 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC30093 | 330 | 3e-25 | 271 - 330 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_30270 | 330 | 3e-25 | 271 - 330 | 100 | 60 / 60 | plus |
Contig Sequence (330 bp)
>U35_30270 330 Hv_44K_v2 CACGTTTGTGCTCGCGGGGCAAAGCCACCGCGCGGATCCGACGATGGTTGGGCCTCTCGC ACGCTGGAGCGGCTCGGCCGCGAGCGAGGGCTCGTGCGGCGCCCGTTTGTGTTCGCCGGA CAAAGCCCTCGCGCGGATCCATCGGTTGCGGGGCCTCTGGAGCGCTGGAGTGGCTCGGCT GCGAGCGAGGGCTCGTGCGGCGGCAGCAGCGGTGCGGCGCTCCTCCGCGCGCCGTTCGTG CTCTTGGGCATGGGAAGGGCGGCGGTTCTCGCGGCGAGGGATGGCGCGTCCTGTGCTCCG GCTGTCCGCCGCGGGGGGTGATGGGGAGGT
Homology of Contig U35_30270 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |