barSeed - Barley Seed Development Database

Probe CUST_14855_PI390587928

Source Contig U35_37095

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14855_PI390587928	Hv_44K_v2	CTGTGAAAAAGAAGCCTAACGGTGCTGTTCCTGAAACAAACAAGAAATCAAAGAAGAAGA	6	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4408.1	2583	2e-24	2067 - 2126	100	60 / 60	minus	ABC16318 ABC18572 ABC19945
JLOC1	JLOC1_2738.1	2613	8e-25	422 - 481	100	60 / 60	plus
Harvest21	ABC32727	412	3e-25	7 - 66	100	60 / 60	minus
Harvest21	ABC18572	459	2e-22	395 - 449	100	55 / 55	plus	ABC18572
Harvest35	U35_37095	412	3e-25	7 - 66	100	60 / 60	minus
Harvest35	U35_22492	459	2e-22	395 - 449	100	55 / 55	plus

Contig Sequence (412 bp)

>U35_37095 412 Hv_44K_v2
CCTTCTTCTTCTTCTTTGATTTCTTGTTTGTTTCAGGAACAGCACCGTTAGGCTTCTTTT
TCACAGATTGTTTTTGTTCTGTATAACTCACAGTTTGATCAGTATGCGCTTCATCTTCCT
TCTCCTCTTCTGGCTCGTCGTCGTCGTCGTCGAGGAGGTCGAAGGGGTTCCTGGCGGCGA
CGCGGGTAGGGGAGGCCGCCTCCTCGTCGTCTTCCTCCTCCTCCACCACCACCACGAGGC
CTTCCTCGGCGGCGGTGTCCTGCGGGAGAAACACTAGTTAACACCAATCCACTATGAAGA
CCTTCCTCATCTTTGCACTCCTCGTCATTGCGGCAACAAGTACGATTGCACAGCAACAAC
CATTTCCACAACAACCCTTCCCACAACAGCCACAACCATACCCACAACAACC

Homology of Contig U35_37095 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None