- Probe CUST_1483_PI390587928
- Source Contig U35_30272
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1483_PI390587928 | Hv_44K_v2 | GCTAGTTATCTGTGATGCATTGTATTGAATTCCATTATATTCCACCATCACTGGACAATA | 313 | GeneList: bisque4 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.700 | 3.458 | 2.047 | 0.689 | 0.079 | 0.014 |
| Raw | 3816.643 | 12858.257 | 6210.003 | 3373.794 | 140.013 | 16.867 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_57718.1 | 1198 | 2e-24 | 932 - 991 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_37453.1 | 1117 | 8e-25 | 922 - 981 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC30096 | 389 | 3e-25 | 314 - 373 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_30272 | 389 | 3e-25 | 314 - 373 | 100 | 60 / 60 | plus |
Contig Sequence (389 bp)
>U35_30272 389 Hv_44K_v2 GCCGATCATCCCTTCCCCGCCTCCCCACATGTCATCTCCATTAGTGGTGGAGGCGAGGGA AGGACTCATGGAGGTGCCGAGGCCGGTTCCTTTTGGACCAAACCCCATACAACATGATCA TCCCGCCCCAGCACCGCAGCCGCATCCCTACCAACATCATAGGCGCCATGCCCCGTCACC GGGTCCATCTCAAGCTTGATGGTTGCCCCACTGGCGACACATACACCTTTTACATTTAGT TACACCGGAATCACTAGCGGAATAAAGGATGGATTATTACATATAGTCAAACAGGTGGCA TGTAACATGGATTGCTAGTTATCTGTGATGCATTGTATTGAATTCCATTATATTCCACCA TCACTGGACAATAAAGTGATAACTTAACA
Homology of Contig U35_30272 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |