- Probe CUST_14837_PI390587928
- Source Contig U35_49085
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14837_PI390587928 | Hv_44K_v2 | CTAGCTATCCATGCTATCTTTGTTAGAAGGTCAGCACACTTTGAGCAATAGCTATTTTTT | 43 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.756 | 1.423 | 1.114 | 0.854 | 0.326 | 0.353 |
| Raw | 2698.943 | 3439.339 | 2330.693 | 2860.073 | 382.881 | 452.868 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK359896 | 1793 | 7e-23 | 1603 - 1659 | 100 | 57 / 57 | plus | ABC12717 |
| MLOC | MLOC_5347.1 | 2181 | 7e-23 | 466 - 522 | 100 | 57 / 57 | minus | ABC12717 |
| MLOC | MLOC_5345.1 | 853 | 7e-23 | 522 - 578 | 100 | 57 / 57 | minus | ABC12717 |
| JLOC1 | JLOC1_3432.1 | 999 | 4e-23 | 528 - 584 | 100 | 57 / 57 | minus | |
| JLOC1 | JLOC1_3433.1 | 1950 | 4e-23 | 1274 - 1330 | 100 | 57 / 57 | plus | |
| Harvest21 | ABC12717 | 1117 | 1e-23 | 689 - 745 | 100 | 57 / 57 | plus | ABC12717 |
| Harvest35 | U35_49085 | 307 | 3e-25 | 44 - 103 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_19067 | 1212 | 1e-23 | 689 - 745 | 100 | 57 / 57 | plus |
Contig Sequence (307 bp)
>U35_49085 307 Hv_44K_v2 TTTTTTTTTTTTTTTTTGGGTTTTTTTTTTTTTTTGCCAAACAAAAAAATAGCTATTGCT CAAAGTGTGCTGACCTTCTAACAAAGATAGCATGGATAGCTAGTACACGAAGGAACTAAC ATGGCTGGTGCGTCGGACCAACTGCGGGCAAAATTTCAATGAATACCTTTCGCAAGGCGG AGCGGTATATACGGAATCTACTGGTCATGAGGCGGGAGCTTCCACCTATCTGGACCCCGA GTGCTATCATCGCCTTGATGATTTCTTGAAAGACCTCGATTTCTGTCGGTGACCTCTTGG AGCCTCC
Homology of Contig U35_49085 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |