- Probe CUST_1482_PI390587928
- Source Contig U35_30273
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1482_PI390587928 | Hv_44K_v2 | GAATGAGCTTAGGACATAATGTTGCGTTGTCTTTGATTCCTGGAATAAGTTAAATGGAGA | 342 | GeneList: salmon MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 4.028 | 3.119 | 1.279 | 0.495 | 0.064 | 0.039 |
| Raw | 9690.827 | 11814.407 | 4200.967 | 2638.293 | 122.909 | 77.895 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_13134.1 | 406 | 8e-25 | 347 - 406 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC30098 | 425 | 3e-25 | 343 - 402 | 100 | 60 / 60 | plus | ABC30098 |
| Harvest35 | U35_30273 | 425 | 3e-25 | 343 - 402 | 100 | 60 / 60 | plus |
Contig Sequence (425 bp)
>U35_30273 425 Hv_44K_v2 CGACCAAAAATACAATAGGAGGAGGAATCAAGGAAATAGTAAAAAACTTCGTTATGGCTC TAATCAACTCAAGGTTTGTGTGCTTGATGGCTCTTTTGCTGATTTCGACCGCTTGCTTGT CGAGTCAAGTATCAGGGACGAACAACATAGGTATAAAAGCCAACGCGTGGGCGGGCCGTG AACCCTACCAGTACAATTGTATGCCTGAAGGCTGTGTTGTTGCCTGCAAAAAACTGGGCT GCGGAACAGGGGTTTGCCATAAAGACGGTAGTTGCTATTGCAGCTAGATAAGACTGCTCA GTCCGCAGTGGTTGCTCTAATTTGTAGCAAGAAAAAGACCCAGAATGAGCTTAGGACATA ATGTTGCGTTGTCTTTGATTCCTGGAATAAGTTAAATGGAGATTCTTTATTTTAAAAAAA AAAAA
Homology of Contig U35_30273 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |