barSeed - Barley Seed Development Database

Probe CUST_14829_PI390587928

Source Contig U35_49094

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14829_PI390587928	Hv_44K_v2	CGCCTGTTGTTGGTGTTGGTATCGTGACCAATTATCTTTTCCTAATTATTGAATTTTGAA	33	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.002	0.968	5.022	2.520	0.513	0.295
Raw	19.886	33.869	146.456	109.857	8.156	4.252

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_49094	298	3e-25	34 - 93	100	60 / 60	minus

Contig Sequence (298 bp)

>U35_49094 298 Hv_44K_v2
TTTTTTTTTTTTTTGTGGGGTTTTTTTTTTTTTTTCAAAATTCAATAATTAGGAAAAGAT
AATTGGTCACGATACCAACACCAACAACAGGCGGACACATTCCATCGAAAAGTAAAATGC
AAGGGCCACTAGCACAAGCTACAACTCAAACGTTGGCGAAACAATACAAAACAACTAAGG
CAAAGCAAATAATTGAACGTATGCATGCCCTTCGTCAAAATCATGCATGCATGCATGGAC
GTAACCTCTCCCATCCCTTTTTTTTGGGGGGAAATCATACAACAAACTCAATGCTATC

Homology of Contig U35_49094 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None