barSeed - Barley Seed Development Database

Probe CUST_14824_PI390587928

Source Contig U35_8000

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14824_PI390587928	Hv_44K_v2	GCAGTTCTCAAGTACAACCTGAGATCTAATTGCTTATCACTGATTGATGTGCCGTTCGCT	613	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70773.1	1406	2e-24	471 - 530	100	60 / 60	minus	ABC31744 ABC46474
JLOC1	JLOC1_46985.1	1385	8e-25	852 - 911	100	60 / 60	plus
Harvest21	ABC17869	673	3e-25	614 - 673	100	60 / 60	plus
Harvest35	U35_8000	673	3e-25	614 - 673	100	60 / 60	plus

Contig Sequence (673 bp)

>U35_8000 673 Hv_44K_v2
CTTCCGTGCTCGCTACCGTGACTTCCATGGAGCTCCCCCCATGCTGGGCTTCCTTTGTTC
CTCGCGCCACAACTCCGTCCGTGAGGTGGGAGATAACATCCCGCACTTCTTCCCCACCAC
CAAATTCCCTGCGCGCATTCCCGACGACGACTGGGGGAACTTCCGGTACGCTGCGTGGGA
CTGCCGCCATGGCCGCGTTCTCCTCGGCGATGGCTCTTGCGACCCCCATTCGCTCGTCGT
TTGGGACCCCATGACTGGCTGCCGGAGGGAGCTGGATCAGCCCGGACAGGTCGGCAGCAC
CTATGGGGCGGCGGTGCTCTGCGCGGTGGCCGGCTGTGACCACCGTGCGTGCCACGCAGG
CCCCTTCCAGGTTGCCTACATTGGTATTGATACGATTGAAGAAGATGGCGAATGCTTTGC
GACCGCATGCTTGTCCTTGCCGATGTCAGCTGATCGGAGCAAGCCGTGCTCTGAATCTCG
TCTTGATAAGTGGGGTGATCCGTGCTCTCTTCTTCGTGTTGGTGGCTACACTCCATCCTG
GGACGAAAGGGCCCCTGTCTTCGTGGAAGACGCACTTTACATCAAGCTCATGTATGACCC
AGGTGATCCCATTGCAGTTCTCAAGTACAACCTGAGATCTAATTGCTTATCACTGATTGA
TGTGCCGTTCGCT

Homology of Contig U35_8000 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None