barSeed - Barley Seed Development Database

Probe CUST_14810_PI390587928

Source Contig U35_28855

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14810_PI390587928	Hv_44K_v2	AAATGGAGGACTCCAAACCTGACCGTGCTACATACGATGCATTCATATGTGCATTTTCGC	497	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.456	0.381	0.761	2.198	1.761	1.871
Raw	3.327	3.490	11.621	54.182	14.726	17.513

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65553.1	1896	2e-24	1363 - 1422	100	60 / 60	minus	None
JLOC1	JLOC1_43142.1	1543	8e-25	441 - 500	100	60 / 60	plus
Harvest21	ABC27948	558	3e-25	498 - 557	100	60 / 60	plus
Harvest35	U35_28855	558	3e-25	498 - 557	100	60 / 60	plus

Contig Sequence (558 bp)

>U35_28855 558 Hv_44K_v2
GAGCTCATCATCGATGGCTATCGCTGCCGCTCGTCGGCGCCTGTGGCGCGGGATGCGAAC
TGCAGCCACCGCCACCGCGTCAGGCGAGGAGCTGTACGGGTCCCTGCTCTCGCGCCTGGT
GGCGGAGCCGGAGTGCCGCGTGAAGGCCACCATGGAGGAGGCGACCTCCTCGTTCCCGCA
CCGCGACGGCGCCTTCTGGGAGCCCCTTGCCGCGGCCCTCCTCCGCGCCTCCTACCCAGC
CAAGGCGCACCTCGTCTTGGAATGGAAGCTAGAGAAGCTACTAAAGGAAGGGGTTAATAG
TCATAATTGTGAACCCTACTCGACAATGATCCATTTCTGTGGAGAGACAAGGAATGCAGC
TCTTGCAATGAGAGTCTTTGAGTGCGCAGAGGCACGGGGAATTCAACTGAACACTGGCAT
TTTCAATGCTCTTATTAACACTTTCTTGGCTGTCGGAGATCTCCTTGCTGCAGTGACCTT
ATACGAGACCATGGAAGAAATGGAGGACTCCAAACCTGACCGTGCTACATACGATGCATT
CATATGTGCATTTTCGCG

Homology of Contig U35_28855 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g06370.2	410	3e-59	protein\|PPR repeat domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g74500.1	414	3e-77
Arabidopsis v10	None