barSeed - Barley Seed Development Database

Probe CUST_1480_PI390587928

Source Contig U35_30276

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1480_PI390587928	Hv_44K_v2	AGGAACTTCTCAGCATAATCAAGAGTGGGGAAGAAGTGTCTGGTCATTGATCCGAAGCTT	310	GeneList: ivory MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.086	0.995	1.824	1.172	0.868	0.821
Raw	39.410	49.738	89.265	79.922	23.137	24.647

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC30101	494	3e-25	311 - 370	100	60 / 60	plus
Harvest35	U35_30276	494	3e-25	311 - 370	100	60 / 60	plus

Contig Sequence (494 bp)

>U35_30276 494 Hv_44K_v2
CCGCCGGAGCTCCGCCCTCCCGCCCGCCGGCCGCTCTCCGGCCCCCTGCAGCTCCTCCAC
CATCCGACCGCCCAGTCCCTTCCTTCCTCTCTTCCCCGCGCGGCCCCGTCCCCGCCCTGC
CTCCTCCTCGCCTCGCCGCTGTCGACTCGACGACCCCAGCTCGCCGCCGTCCGCGAAGGC
GACGACCGGAAGCAGCGGCCCAGATCGAGGAGCGAGGGCCCTCTCAGGTGTTGAGTGGGC
CAAATGGCACAGATTCCAAACCTCGATAACGCCCCGCTCAACCTTACCGCCCTCAGGGAG
CAGTCACAGAAGGAACTTCTCAGCATAATCAAGAGTGGGGAAGAAGTGTCTGGTCATTGA
TCCGAAGCTTGCGGGTACCCTCTCGCTGATCCTGCAGACCTCGGTGCTAAAGGAATATGG
CACGGAGCTGCGGATCCTCTCTGCTGACCCTCTGCAGACAGAATGCCCCCAAGTGGTGTA
TCTTGTTCGCTCCC

Homology of Contig U35_30276 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None