barSeed - Barley Seed Development Database

Probe CUST_14807_PI390587928

Source Contig U35_16881

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14807_PI390587928	Hv_44K_v2	AGAAGCTCAATGTGCTCAAGGGCATTCTGAACAACTATGTCTTCATGTGTGTCCTCAGCA	1468	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34557.1	3950	2e-24	643 - 702	100	60 / 60	minus	ABC09357 ABC14714
JLOC1	JLOC1_22296.1	3892	8e-25	3148 - 3207	100	60 / 60	plus
Harvest21	ABC09357	2208	1e-23	1469 - 1528	98	59 / 60	plus	ABC09357
Harvest35	U35_16881	2212	3e-25	1469 - 1528	100	60 / 60	plus

Contig Sequence (2212 bp)

>U35_16881 2212 Hv_44K_v2
ACACTAACAACTAATCATATGACTGTTGTCAAGACCTGCATTTGTGGAAATATCAGAGAG
GTTAACAATCCTCAGAATGCCTCCAAGTTGCGTTCAGAACTTCCAGAAAATGTTGTCAGA
ACTCTTCTCGAGTCTATATTTAACAATACAGGTGGTGAGGTTGTTATTGACCAAAACGGG
AAACACCAGATCCTTGGTACCCCAACAGAGACAGCCATATTGGAGTTTGCAATGTCAATA
GGTGGAAACTTTAAGGCAAAGCGTGCTGAAACTAAGATTGCGAAAGTGGAGCCTTTCAAT
TCAACAAAAAAGAGGATGTGTGTCCTTCTTGAGCTTGCCGAAGGAGGATACCGTGCACAT
TGTAAAGGTGCTTCAGAAATAGTCTTGGCTGCATGTGATAAGTTCATAGATGAGACAGGT
GCTGTTACCCCTCTTGATAAAGCAACTGCTGGCAAGCTCAATGGTATTATTGATGGTTTT
GCTCATGAAGCTCTTAGGACATTGTGCCTTGCTTACAGGGAAATGGAAGAAGGTTTTTCC
ATTGAAGAGCAATTACCACTGCAAGGGTACACATGCATTGCTATTGTAGGTATTAAAGAT
CCTGTTCGCCCAGGTGTGAGAGAGTCTGTTGCAATTTGCCGCTCTGCTGGAGTTACGGTG
AGAATGGTCACAGGCGACAACATAAATACAGCAAAGGCGATTGCCCGTGAATGTGGTATA
CTCACTGAAGATGGTCTGGCTATTGAGGGACCGGATTTCAGGGAGAAAACTCTTGAGGAA
CTCCTTGTGCTTGTTCCAAAAATTCAGGTAATGGCCCGATCATCACCCCTGGATAAGCAT
ACACTTGTAAAGCATTTACGCACAACATTCAATGAAGTTGTTGCTGTTACTGGTGACGGC
ACAAATGATGCTCCCGCTCTGCATGAAGCAGATATTGGACTTGCAATGGGCATTGCTGGG
ACTGAGGTGGCGAAAGAGAGTGCCGATGTCATCATTCTGGACGACAACTTCTCTACAATT
GTAACTGTTGCCAGATGGGGACGCTCTGTTTACGTCAACATTCAAAAATTTGTGCAGTTT
CAGTTAACTGTTAATGTTGTCGCCTTGCTTGTTAACTTCTCCTCAGCTTGTTTTACAGGA
AATGCGCCACTGACGGCTGTTCAACTTCTTTGGGTCAACATGATTATGGACACACTTGGT
GCGCTTGCATTAGCCACCGAACCACCCAATGATGACTTGATGAAGAGAGAGCCAGTAGGA
AGAACAGGGAAGTTCATCACAAATGTAATGTGGAGGAACATTTTTGGGCAATCTATATAC
CAATTTGTTGTCATGTGGTATCTCCAGACGCAAGGAAAAACCTTTTTTGGGCTTGAAGGC
TCTGATGCTGATATAGTGCTGAATACAATTATTTTCAACTCATTCGTCTTCTGCCAGGTG
TTCAATGAGATAAGTTCGAGGGAGATGGAGAAGCTCAATGTGCTCAAGGGCATTCTGAAC
AACTATGTCTTCATGTGTGTCCTCAGCAGCACGGTCGTCTTCCAGTTCATCATGGTCCAG
TTCCTCGGCGAGTTTGCCAACACGACGCCTCTCACCAGTCTCCAGTGGCTCGCCAGCGTG
CTCCTTGGCCTCGTCGGGATGCCGATCGCCGTCGTCGTCAAGCTCATTCCTGTTGGGTCC
TCCTGATGAAAAGGGCAGCCCACCATGCGAAGGACGCGCGGCGAAAAGACCGATTCCGTA
GTGTGTGGACCTGAATCCTCCATGCAGGGTCTTTTGGGATGCATGGAGAGCAAGCCTGAG
AAGAGCTGCACTAGACAAGTTTTAAAGCCTACGAGTGTGGCAGATTTGCATCATATTGTT
GTGTAAGAAGCATTTGTACTTGGTGCTAGGGCTTAGGGCCTGCTCGTCGGCACCTGTAAT
ATTGATGTCTGGCTGGGATTCAGACCCCGAAAAGATGTATATTTTGCGGATCGATAAACA
GAAACCTGATCATTTCGACCCCTTCATTCCGTATCGGCATATGACCGAGACCTTCCAGGA
ATGGAGTGCATGTAGTCCAGACAGAACTACAGTAGTTTCTTACTATGTTGGAACCATGTT
GGATTTCAAGTGCTTTACCGTGGAATTCTTGAACTCTTGTAAGAATGTCCCAAATTGATT
TGAGATAATGTATGGTAATGTATTCTGTGATTGACCAAAAAAAAAAAAAAAA

Homology of Contig U35_16881 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os12g39660.1	1021	protein\|calcium-transporting ATPase, plasma membrane-type, putative, expressed
Brachypodium v1_2	Bradi4g03130.1	1020
Arabidopsis v10	AT1G27770.1	1020	\| Symbols: ACA1, PEA1 \| autoinhibited Ca2+-ATPase 1 \| chr1:9671912-9676010 REVERSE LENGTH=1020