barSeed - Barley Seed Development Database

Probe CUST_14806_PI390587928

Source Contig U35_16882

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14806_PI390587928	Hv_44K_v2	AGTTGTATGATAGCGGCAATAGCATTTTCTGCTATCACAAATCACATGACAATGTATGTT	1473	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366110	2706	2e-24	2602 - 2661	100	60 / 60	plus	ABC15411 ABC22344
MLOC	MLOC_50046.2	2379	2e-24	2158 - 2217	100	60 / 60	plus	ABC15411
MLOC	MLOC_50046.1	2400	2e-24	2164 - 2223	100	60 / 60	plus	ABC15411
JLOC1	JLOC1_31971.2	2074	8e-25	1721 - 1780	100	60 / 60	plus
JLOC1	JLOC1_31971.1	2533	8e-25	2180 - 2239	100	60 / 60	plus
Harvest21	ABC15411	1596	3e-25	1474 - 1533	100	60 / 60	plus	ABC15411
Harvest35	U35_16882	1948	3e-25	1474 - 1533	100	60 / 60	plus

Contig Sequence (1948 bp)

>U35_16882 1948 Hv_44K_v2
TTTACCTCCAGTAATCACTCTAGCTGTTTTTGGAGGAGTACTGGGGAGCCTGTACAACTT
CTTCCTCGACAAGGTTCTTCGTCTCTACAATATTATCAACGAGAAAGGTCGAACCTACAG
ACTGCTCCTGGCCGCAACAGTCTCCATCTGTACTTCATGTTGCCTCTTTGGCTTGCCATG
GCTTGCAGCTTGCAAACCTTGCCCAGCTGACTCAAGAGAAGCTTGTCCGTCAATAGGGAG
ATCTGGAAATTTCAAGAAGTTCCAGTGTCCAATGCATAACTACAATGACTTGGCCAGCCT
GTTCTTTAACACCAATGATGACACCATTAGAAACCTCTACAGTAATGGCACTGACCATGA
GTTCCATATCACCTCGATCCTTGTGTTCTTTATTGCATCATATTTCCTGGGCATTTTCAG
CTATGGCCTCGCCTTACCATCTGGCCTTTTTGTACCAGTTATTTTGACTGGTGCAGCTTA
CGGTCGTCTGGTTGGCATGTTGATTGGGTCGCAATCAACTTTGGATCATGGTCTTTTTGC
TGTTCTTGGTTCTGCTGCCCTTCTAGGTGGATCAATGAGAATGACAGTCTCAGTTTGTGT
TGTCATCCTAGAACTGACAAATAATCTGCTGATGCTTCCTCTGGTTATGCTGGTCCTTAT
CATATCAAAGACAGTGGCAGATGCTTTTAATGCAAATGTCTATGATCTGCTTGTTAAATT
GAAGGGTTTTCCTTTTCTTGAAGGGCATGCTGAACCGTACATGCGACAACTGTCAGTTAC
TGATGTTGTAACTGGCCCTCTGCAGACATTCAGTGGCATAGAGAAGATTGGCCGTATTGT
GGATATCTTGAAGGCAACCGGTCATAATGGCTTCCCCGTCGTTGACGAGCCACCATTTTC
AGACACTCCTCTGCTATATGGCCTAGTTCTTCGGTCGCACCTGCTTGTTCTATTGAGGAA
GAAAGAGTTCCTCAATAGTTGCACATCTTCAGCATCAGATGCTTCAAAGCATTTCTCACC
TGATGATTTTGCTAAACGTGGTTCAGGAAAGCATGACAGAATTGAGGACATTGAATTGAC
TGCAGAAGAACTGGAAATGTTTGTAGACTTGCATCCTTTCACAAACACATCCCCTTACAC
TGTGGTTGAGACTATGTCCTTGGCTAAAGCTCTTATACTCTTTCGTGAAGTTGGATTAAG
ACACCTTTTGGTTCTTCCAAAAACTTCCAAGAGGGCGCCTGTTGTTGGCATATTAACACG
GCACGACTTCATGCCTGAGCACGTATTGGGTCTCCATCCGTACCTGTTCAAGAGCAGATG
GAAGAAGGTGCGATTTGGCAAGACAGCCTTTTCCAACTTCTTTTGACAATTGCCATAGTA
GTAACTAATGATTCAGAGAATTAACTAAGCGACCATCGACACATTGTATGGGAACCATCG
GGTTGTAGTTTACCAACCATATACGGATAAGCTAGTTGTATGATAGCGGCAATAGCATTT
TCTGCTATCACAAATCACATGACAATGTATGTTGCTCCTGAGCGGCCGCTGGAGAGCAAG
CCTGAGAAGAGCTGCACTAGACAAGTTTTAAAGCCTACGAGTGTGGCAGATTTGCATCAT
ATTGTTGTGTAAGAAGCATTTGTACTTGGTGCTAGGGCTTAGGGCCTGCTCGTCGGCACC
TGTAATATTGATGTCTGGCTGGGATTCAGACCCCGAAAAGATGTATATTTTGCGGATCGA
TAAACAGAAACCTGATCATTTCGACCCCTTCATTCCGTATCGGCATATGACCGAGACCTT
CCAGGAATGGAGTGCATGTAGTCCAGACAGAACTACAGTAGTTTCTTACTATGTTGGAAC
CATGTTGGATTTCAAGTGCTTTACCGTGGAATTCTTGAACTCTTGTAAGAATGTCCCAAA
TTGATTTGAGATAATGTATGGTAATGTA

Homology of Contig U35_16882 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g55210.1	809	protein\|chloride channel protein, putative, expressed
Brachypodium v1_2	Bradi5g23807.1	809
Arabidopsis v10	AT5G33280.1	765	Voltage-gated chloride channel family protein \| chr5:12549280-12552305 FORWARD LENGTH=765