barSeed - Barley Seed Development Database

Probe CUST_14804_PI390587928

Source Contig U35_16884

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14804_PI390587928	Hv_44K_v2	CTTCCATCTATAATAATAAAAAGAAAACAGTCGAAGCAAATTGAAGTGCACTTCCAACGG	1489	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59602.2	1730	2e-24	1650 - 1709	100	60 / 60	plus	ABC03542 ABC37852
MLOC	MLOC_59602.1	1667	2e-24	1587 - 1646	100	60 / 60	plus	ABC03542 ABC37852
JLOC1	JLOC1_38801.2	1948	8e-25	1562 - 1621	100	60 / 60	plus
Harvest35	U35_16884	1575	3e-25	1490 - 1549	100	60 / 60	plus

Contig Sequence (1575 bp)

>U35_16884 1575 Hv_44K_v2
CCGGCCCTTTTTCTCGCGCACTCGGAACTCGGCACTCGCAGAGTCATCGCATTCGCATCT
CCATCAGGCTGCTCATCCCGGCCACCTGCCGAATCCCCATCCTCGTTCCGCTGCCGTCGA
GGAGGATGGCCTCCGGCGAGAGCAGCTCCAGCCACCCCACGGAGAAGAAGGAGGAGGCCG
CCGCCGGAGGAGCTGGCTTCGACGATCTGGAGGACCCGCGCTTCCAGTGCTGCGTATGCC
TGGAGCTTCTCTATAAACCAGTTGTTATTGCATGTGGTCATATGTCATGTTTCTGGTGCG
TCCATAAAGCTATGCATTTCGCCAGGGAATCCCATTGTGCAATATGCAGGCAACCGTATA
CTCATTTTCCAAGTATCTGTCAACTCCTCCATCACTTGCTTTTAAAGCTTGAACCTGTGG
AATACAAAAAAAGGGAAAAGGAAGTACTAGAGCAAGAGAGGAGCGTGGATACTTTTTCTC
CACAAATCATCGAGTTCTTAAACTCCAAGAACAATAATGGTGAAAATGGAAAAGATTGGG
ACAACAAATTTGAAGATAGCAAAACTGGATCTCTAGGAGAAGTCTCAGTTGATGACAATA
CTATTAACGAGGATTCAATGAAAATAAAGTTAGACGATGTGTCTTGTCCCATCTGCAAGG
AGCTGCTGTATCAACCTGCTGTTCTTAACTGTGGTCATGTGTATTGCATATCTTGTCTAC
CTTCCGTGGGTGATGAAGCATTGAAATGTCAAGTCTGTGGAGGTCTTCACCCTGGAGATT
TTCCTAATGTTTGTTTAGATCTTGAGCACTTTCTGGAAGAATATTTTCCAGCAGAATATG
AATCAAGACGGAAGAAACTTCAGCTTGAGAATATCCAATGCAATCCTGAAGGATCATCTT
CAAGTACTTCATGCAAGAAGGGAACTTTTGTACAGAAGACTCTAGACTTATCAAATGTTC
ACATTGGAGTTGGATGTGACTCATGCGGGGTCTATCCGATAAGAGGCCAGCGATACAAAT
GCAAAGATTGCACAGAGGCAATTGGATTCGACCTTTGCGGGGAATGCTATGACAGCACTT
CGAAACTCCCAGGCCGCTTTAATCAGCAGCACACTCCTGACCACAGGATGGAACTCGATA
ATACATCACTGTTTGACGCGTTCCTGAGATTCCAAGGGATACCAGCGGAGGGTCTACAGC
AGCTGGTACAACAAATGGAGCTCATTGGTGCTGATGGTATGGTGCAGATAGTGGCTGCTG
CTGATGATGAGATGGAGGACAATCACGAGGATGCTTAGTTGTTGCTGTAGGAACCGGGCA
AGCATTTCTAGCAAAGCTGAGTTGTGGAGCGAGCCTTGAAATATTCTGGGGGTCGGATCA
AATGAATGTGGTGTGAATGTGTGATACAGTCCTTGATTCCTTTTGGGTCGAAAGGTCAAG
TAGTCTTGCTTATGCTTTCGTACGGTTATTTATTACTATATATATCAGTCTTCCATCTAT
AATAATAAAAAGAAAACAGTCGAAGCAAATTGAAGTGCACTTCCAACGGTTTTTGATGTA
AAAAAAAAAAAAAAA

Homology of Contig U35_16884 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g40810.1	409	6e-174	protein\|Zinc finger, ZZ type domain containing protein, expressed
Brachypodium v1_2	Bradi3g49030.1	395	0.0
Arabidopsis v10	AT3G24800.1	410	5e-99	\| Symbols: PRT1 \| proteolysis 1 \| chr3:9055653-9057795 FORWARD LENGTH=410