barSeed - Barley Seed Development Database

Probe CUST_1479_PI390587928

Source Contig U35_30277

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1479_PI390587928	Hv_44K_v2	CCGTGCGCAGGGACGACGGCGAGCTCGAGCTCGCCATCAAGGACTACCCGTACGCCGACG	110	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370754	3072	2e-24	2053 - 2112	100	60 / 60	plus	ABC23795
MLOC	MLOC_51884.2	1654	2e-24	659 - 718	100	60 / 60	plus	ABC23795
MLOC	MLOC_51885.1	4967	2e-24	599 - 658	100	60 / 60	plus	ABC23795
MLOC	MLOC_51885.2	4972	2e-24	599 - 658	100	60 / 60	plus	ABC23795
MLOC	MLOC_51884.1	1308	2e-24	348 - 407	100	60 / 60	plus	ABC23795
JLOC1	JLOC1_33174.1	2139	8e-25	881 - 940	100	60 / 60	plus
Harvest21	ABC30103	177	3e-25	111 - 170	100	60 / 60	plus
Harvest35	U35_30277	177	3e-25	111 - 170	100	60 / 60	plus

Contig Sequence (177 bp)

>U35_30277 177 Hv_44K_v2
GGCCTTCTGGCCTGGCAAGTACTCCATCGAGCTCAGCTCCGTAGCCTACGGCGCCGCCTG
GCAGTTCAACACGGAGGCGCTGCCGGAGGACCTCATCAACCGGGGGCTCGCCGTGCGCAG
GGACGACGGCGAGCTCGAGCTCGCCATCAAGGACTACCCGTACGCCGACGACGGGCT

Homology of Contig U35_30277 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None