barSeed - Barley Seed Development Database

Probe CUST_14797_PI390587928

Source Contig U35_28861

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14797_PI390587928	Hv_44K_v2	TCATATGAAAGAACTGAGGGATGGTATTCGTTCATTTGATGATTTTCTGCGTGATGGATT	518	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61052.6	2949	2e-24	2104 - 2163	100	60 / 60	plus	None
MLOC	MLOC_61052.4	3341	2e-24	1121 - 1180	100	60 / 60	minus	None
MLOC	MLOC_61052.3	3016	2e-24	1121 - 1180	100	60 / 60	minus	None
JLOC1	JLOC1_39859.1	3274	8e-25	2095 - 2154	100	60 / 60	plus
Harvest21	ABC27954	581	3e-25	519 - 578	100	60 / 60	plus
Harvest35	U35_28861	581	3e-25	519 - 578	100	60 / 60	plus

Contig Sequence (581 bp)

>U35_28861 581 Hv_44K_v2
GCACAGGTTCTGTCTAGGTTATCCTATATGGCATCTTTAGGCTATATGACACGCATAACA
CCACAGTTTGAGAAGACCCGGAAAACAAGCGGTCCACGTGCTTTGCAGCCCAGTCAGTGG
GGTATGCTTTGTCCTTGTGATACACCCGAAGGGGAAGCTTGTGGATTGACGAAAAATCTA
GCTTTAATGACCCATGTTACGACAGATCAAGAGGAGGGCCCACTGAGGAATCTGTGTTTT
AGCCTAGGTGTGGAAGATTTGTCACTTCTGTCCGGAGAAGAAATCCATGCACCGGGTTCA
TTTCTGGTCATGTTCAATGGATTAATACTAGGGAAGCACAGGCAGCCTCAGAAATTTGCT
AATAATATGAGAACATTCCGCCGATCAGGCAAAATTGGAGAGTTTGTAAGCGTTTTTGTA
AATGAGAAACAGCATTGCATTCATATTGCTTCTGATGGTGGCCGCGTTTGTCGTCCACTT
ATAATTGCTGACAAGGGCAGAGCAAGGGTTAAAGAGCATCATATGAAAGAACTGAGGGAT
GGTATTCGTTCATTTGATGATTTTCTGCGTGATGGATTGAT

Homology of Contig U35_28861 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi3g05847.1	1159	1e-123
Arabidopsis v10	AT5G45140.1	1161	6e-100	\| Symbols: NRPC2 \| nuclear RNA polymerase C2 \| chr5:18247416-18257713 REVERSE LENGTH=1161