barSeed - Barley Seed Development Database

Probe CUST_14793_PI390587928

Source Contig U35_28866

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14793_PI390587928	Hv_44K_v2	ATGACATATGCAATATGTTTGGGTGTTGGAACTGTCTTCTTGTTAATTCACTCAATTCCG	454	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54603.3	4822	2e-24	1775 - 1834	100	60 / 60	plus	None
MLOC	MLOC_54603.2	5157	2e-24	1936 - 1995	100	60 / 60	plus	None
MLOC	MLOC_54603.4	4743	2e-24	1768 - 1827	100	60 / 60	plus	None
MLOC	MLOC_54603.1	4915	2e-24	1938 - 1997	100	60 / 60	plus	None
JLOC1	JLOC1_35154.2	3857	8e-25	838 - 897	100	60 / 60	plus
JLOC1	JLOC1_35154.1	4862	8e-25	1843 - 1902	100	60 / 60	plus
Harvest21	ABC27966	517	3e-25	455 - 514	100	60 / 60	plus
Harvest35	U35_28866	517	3e-25	455 - 514	100	60 / 60	plus

Contig Sequence (517 bp)

>U35_28866 517 Hv_44K_v2
TCCTCCGGGCTGCAGGACATTCGCACGAGGTTCGAATTTTCTGCTGTGTCCTGTGGTAAA
CTTAATACTAGTTGCATCTTGAGCAGCAAAGATTGTATTTCAGAAACCAAGCGTGGGGCT
TGTAATCATGGGAAAGAACCCTTAGCAGCCAAGGATGGAGTATTACCTCCATGTACTCCT
TGTTTGTTGTTCAGTCAAGCACCTATTGACCAGTACAATGAATCTGTGGGATTAAAATCT
GAAAAGGAAAATTTGAAGAATGCCGAAAGTGCCCCACCATTGGATGTTAACGTTAAGAAG
ACATCCAGAACTTCATCACGTTTAGCCAAAGAACAGAATGCTGTAGCTCATGCAAAGACT
AGAACCACCAGATCAAGTAAGCGAACTGCACATACGAATGCTTTGGTCTGTGGGAAGCTA
AACTGCTCTCTTGATGGTGTTGAATACAACAGAGATGACATATGCAATATGTTTGGGTGT
TGGAACTGTCTTCTTGTTAATTCACTCAATTCCGAGT

Homology of Contig U35_28866 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g57690.1	1001	1e-57
Arabidopsis v10	None