barSeed - Barley Seed Development Database

Probe CUST_14792_PI390587928

Source Contig U35_28867

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14792_PI390587928	Hv_44K_v2	GAAGCTGGATTATACTTTTGGAACTTTTCCCTCCATTTTCTTTGTACCGAATTGTCTATG	328	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75332.8	2982	2e-24	1539 - 1598	100	60 / 60	minus	ABC26036
MLOC	MLOC_75332.2	3284	2e-24	1551 - 1610	100	60 / 60	minus	ABC26036
MLOC	MLOC_75332.1	3121	2e-24	1552 - 1611	100	60 / 60	minus	ABC26036
MLOC	MLOC_75332.11	3209	2e-24	1592 - 1651	100	60 / 60	minus	ABC26036
MLOC	MLOC_75332.6	3041	2e-24	1539 - 1598	100	60 / 60	minus	ABC26036
MLOC	MLOC_75332.7	2941	2e-24	1539 - 1598	100	60 / 60	minus	ABC26036
MLOC	MLOC_75332.5	2057	2e-24	1539 - 1598	100	60 / 60	minus	ABC26036
MLOC	MLOC_75332.12	3115	2e-24	1588 - 1647	100	60 / 60	minus	ABC26036
MLOC	MLOC_75332.9	3182	2e-24	1539 - 1598	100	60 / 60	minus	ABC26036
JLOC1	JLOC1_50250.4	3129	8e-25	1505 - 1564	100	60 / 60	plus
JLOC1	JLOC1_50250.3	3462	8e-25	1505 - 1564	100	60 / 60	plus
JLOC1	JLOC1_50250.2	2821	8e-25	1197 - 1256	100	60 / 60	plus
JLOC1	JLOC1_50250.6	3125	1e-22	1505 - 1560	100	56 / 56	plus
Harvest21	ABC27967	397	3e-25	329 - 388	100	60 / 60	plus
Harvest35	U35_28867	397	3e-25	329 - 388	100	60 / 60	plus

Contig Sequence (397 bp)

>U35_28867 397 Hv_44K_v2
GTTATGATGAAGATGCATGGTCTTGGTGATTTGCCATATTGGACTATATCCTATTGCTAT
TTTATTCTTCTGTCCATGCTATACTTGCTGTCCTTCATGGTATATGGTACTGTGTTTGGT
TTTACATTCTTTCGACTGAATAGCTATGGCGTACAGTTTGTGTTCTACTTTGCTTATATG
AGCTTGCAAATTTCATTTGCATTTCTTATGGCAACATGCTTCTCAAATGTGAGAACAGCT
GCTGTGACAGGATATTTCTACGTATTTGGGTCCGGCCTTATAGCAGATTTTTTTTTCAAG
CCCTATATCGAAGACATTTTCATCTCAAGAAGCTGGATTATACTTTTGGAACTTTTCCCT
CCATTTTCTTTGTACCGAATTGTCTATGAATTTTCTC

Homology of Contig U35_28867 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g11960.1	965	5e-62	protein\|ABC transporter, ATP-binding protein, putative, expressed
Brachypodium v1_2	Bradi3g08020.1	915	1e-71
Arabidopsis v10	None