barSeed - Barley Seed Development Database

Probe CUST_14788_PI390587928

Source Contig U35_16891

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14788_PI390587928	Hv_44K_v2	TTTCTTCCCCCCTGTTTCTATTTTGTCTGTAAAAGAAACAATCCTGTCTGATGATCATTA	1673	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56775.1	1949	2e-24	1504 - 1563	100	60 / 60	plus	ABC06438 ABC06439
JLOC1	JLOC1_36750.2	2340	8e-25	1806 - 1865	100	60 / 60	plus
JLOC1	JLOC1_36750.1	2057	8e-25	1523 - 1582	100	60 / 60	plus
Harvest21	ABC06440	647	3e-25	45 - 104	100	60 / 60	minus
Harvest21	ABC06438	1153	3e-25	1042 - 1101	100	60 / 60	plus	ABC06438
Harvest35	U35_16892	725	3e-25	622 - 681	100	60 / 60	plus
Harvest35	U35_16891	1785	3e-25	1674 - 1733	100	60 / 60	plus

Contig Sequence (1785 bp)

>U35_16891 1785 Hv_44K_v2
CCCGGGCTGCAGGCGGAAACAGAGCACAACGCAAAGAAAACCAGCAGCGAATCCCACACA
TCCTCCGCCTGCCATCTCCAACCCCCGATCAGGTTGGTATTCCGGCGAACCCTCCACTCG
GACTCCAACCAGCCCCGGTCTCGGCCGCGTCCCACTCCCCCCCTGCAACCCCTCTTCGTC
GGAGCCAGAGGTCCCCTTCGGCGGCAGTTCGAGCCGAATCGCTCCTTCTTCCTCGTCGTC
AGGCACAGCAACAGAGAGAGAGACAGAGCTCACCGGCGGCGGCGGCGGCGAACCGGACAT
GTGCGTGGAGGGATTCGAGGACGCGCAGATCGAGAGGCCGGCAGATTTCGTGATGGAGAG
AGTTTGTGAGAACACAGTGTCCATTGATTTCAAGCAAACTACAATGGTAACTGTGATTGG
AGAGAGTTGGCACAATTTTGTCCCAACTATCCGGTCAGGGGACTGGTCTGACATTGGTGG
CCGTGACTACATGGAAGATGCGCATGTGTGCATCCCCAACCTAGCCAAGAATTTTGGTTT
TAACATGGTGGATGATGAAGTTATTTCCTTTTATGGGGTCTTTGATGGCCATGGTGGAAA
AGATGCTGCACAGTATGTTCGCGATAATTTGCCACGGGTCATCGTGGAAGATGCTGCTTT
TCCTCTTGAGCTTGAGAAGGCAGTCAGGAGGTCGTTTGTGCAAACTGATAGTCAGTTTGC
AGAGAAGTGCTCTCTACATGATGGACTTTCTTCTGGAACAACCGCACTTACAGCAATGAT
TTTTGGAAGGTCTCTTCTGGTTGCAAATGCTGGTGATTGCCGAGCGGTCCTTTCCCGGCG
CGGCGCCGCAATCGAAATGTCCAAGGACCACAGGGCCTGCTGCCTGAATGAAAGAAAGCG
GGTCGAATCCCTAGGCGGCTACGTCGACGACGGCTATCTGAACGGCCAGTTAGCGGTCAC
CAGAGCGCTCGGTGACTGGCATCTCGACGGGCTCAAGGAGATGGGCGAGCCGGGAGGCCC
GCTGAGCGCTGAGCCGGAGCTCAAGATGATCACGCTGACCAAGGACGACGAGTTCCTCAT
CATCGGCAGCGACGGCATCTGGGACTTCTTCTCCAACCAGAACTCGGTGGACTTTGCACG
GCGGAGGCTCCAGGAGCACAACGACCTGAGGCGGTGCTGCAAGGAGATCGTGGAGGAGGC
GATCAGGCGGGGCGCCACCGACAACCTGACGGCGGTGATGGTCGCCTTCCACCAGGAGGC
CCCTCCCCAGATCAGGGTGAGCAGGATGGGCAGGGTGGAGCGGAGCATCTCGGCCGAGGG
GCTCCATAGCCTCAGGGTGCTCCTGGAAGGCCAGTGATCTTCGGCGGCGCGCCATTGTCG
CCGCCTTGTTCGTTCTACATTGTTGAGCGTCAACTGTAAGTACCGATTGCGGCCTCCCTG
CTGTTGCTCATGTTTGTCCGTCCGTTCATCATCCATCGTCGTCGTCGACATGCCAGTGGT
GGCTCTATTGCTACCTGGGAGGAATAAAACCAACGAACCTGGAGAAGGTCTCACGCGCCA
TTGTGAATTGTGAGGCACCTGTAAATATAAGTTGGGAGCTTAGGGTTGGTAACAGAGTCA
GTAGCGTGCATCCAGGGGGCTTTGAGGCTCATTATGAGATGAGATGAGATGTTTTTCTTC
CCCCCTGTTTCTATTTTGTCTGTAAAAGAAACAATCCTGTCTGATGATCATTATTATATC
AGTGTAACTAAAAATGTGTCATGTTAAAAAAAAAAGAAAAAAAAA

Homology of Contig U35_16891 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g55560.1	355	0.0	protein\|protein phosphatase 2C, putative, expressed
Brachypodium v1_2	Bradi3g54290.1	361	0.0
Arabidopsis v10	AT2G25620.1	392	2e-115	\| Symbols: AtDBP1, DBP1 \| DNA-binding protein phosphatase 1 \| chr2:10903154-10904978 REVERSE LENGTH=392