barSeed - Barley Seed Development Database

Probe CUST_14787_PI390587928

Source Contig U35_16892

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14787_PI390587928	Hv_44K_v2	CTTCCCCCCTGTTTCTATTTTGTCTGTAAAAGAAACAATCCTGTCTGATGATCATTATTA	624	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56775.1	1949	2e-24	1507 - 1566	100	60 / 60	plus	ABC06438 ABC06439
JLOC1	JLOC1_36750.2	2340	8e-25	1809 - 1868	100	60 / 60	plus
JLOC1	JLOC1_36750.1	2057	8e-25	1526 - 1585	100	60 / 60	plus
Harvest21	ABC06440	647	3e-25	42 - 101	100	60 / 60	minus
Harvest21	ABC06438	1153	3e-25	1045 - 1104	100	60 / 60	plus	ABC06438
Harvest35	U35_16892	725	3e-25	625 - 684	100	60 / 60	plus
Harvest35	U35_16891	1785	3e-25	1677 - 1736	100	60 / 60	plus

Contig Sequence (725 bp)

>U35_16892 725 Hv_44K_v2
ATCACGCTGACCAAGGACGACGAGTTCCTCATCATCGGCAGCGACGGCATCTGGGACTTC
TTCTCCAACCAGAACTCGGTGGACTTTGCGCGGCGGAGGCTCCAGGAGCACAACGACCTG
AGGCGGTGCTGCAAGGAGATCGTGGAGGAGGCGATCAGGCGGGGCGCCACCGACAACCTG
ACGGCGGTGATGGTCGCCTTCCACCAGGAGGCCCCTCCCCAGATCAGGGTGAGCAGGATG
GGCAGGGTGGAGCGGAGCATCTCGGCCGAGGGGCTCCATAGCCTCAGGGTGCTCCTGGAA
GGCCAGTGATCTTCGGCGGCGCGCCATTGTCGCCGCCTTGTTCTACATTGTTGAGCGTCA
ACTGTAAGTACCGATTGCGGCCTCCCTGCTGCTGCTCATGTTTGTCCGTTCGTTCATCAT
CCATCGTCGTCGTCGACATGCCAGTGGTGGCTCTATTGTTACCTGGGAAGAATAAAACCA
ACGAACCTGAAGAAGGTCTCACCCGCCATTGTGAATTGTGAGGCACCTGTAAATATAAGT
TGGGAGCTTAGGGTTGGTAACAGAGTCAGTAGCGTGCATCCAGGGGGCTTTGAGGCTCAT
TATGAGATGAGATGAGATGTTTTTCTTCCCCCCTGTTTCTATTTTGTCTGTAAAAGAAAC
AATCCTGTCTGATGATCATTATTATATCAGTGTAACTAGAGTTGTGTCAAAAAAAAAAAA
AAAAA

Homology of Contig U35_16892 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g55560.1	355	5e-57	protein\|protein phosphatase 2C, putative, expressed
Brachypodium v1_2	Bradi3g54290.1	361	3e-58
Arabidopsis v10	None