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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_14786_PI390587928Hv_44K_v2ATTTCCTTTTATGGGGTCTTTGATGGCCATGGTGGAAAAGATGCTGCACAGTATGTTCGC553GeneList: lightyellow
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.2710.4981.0741.7181.2511.145
Raw 35.58795.831187.376462.503124.559124.506



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_56775.119492e-24393 - 45210060 / 60plus ABC06438 ABC06439
JLOC1JLOC1_36750.223408e-25358 - 41710060 / 60plus
JLOC1JLOC1_36750.120578e-25412 - 47110060 / 60plus
Harvest21ABC282796313e-25539 - 59810060 / 60plus
Harvest21ABC064376133e-25554 - 61310060 / 60plus
Harvest21ABC064369533e-25561 - 62010060 / 60plus
Harvest35U35_291006313e-25539 - 59810060 / 60plus
Harvest35U35_168936153e-25554 - 61310060 / 60plus
Harvest35U35_1689117853e-25563 - 62210060 / 60plus



Contig Sequence (615 bp)

>U35_16893 615 Hv_44K_v2
CGGAAACAGAGCACAACGCAAAGAAAACCAGCAGCGAATCCCACACATCCTCCGCCTGCC
ATCTCCAACCCTCGATCAGGTTGGTATTCCGGCGAACCCTCCACTCGGACTCCAACCCGC
CCCGGTCTCGGCCGCGTCCCAGTCCCCCCCCCCCCCCCTTCAATCCCTCTTCGTCGGAGC
CAGAGGTCCCCTGCGGCAGCAGTTCGAGCCGAATCGCTCCTTCTTCCTCGTCGTCAGGCA
CAGCAACAGAGAGACAGAGCTCACCGGCGGCGGCGGCGGCGAACCGGACATGTGCGTGGA
GGGATTCGAGGACGCGCAGATCGAGAGGCCGGCAGATTTCGTGATGGAGAGAGTTTGTGA
GAACACGGTGTCCATTGATTTCAAGCAAACTACAATGGTGACTGTGATTGGAGAGAGTTG
GCACAATTTTGTCCCAACTATCCGGTCAGGGGACTGGTCTGACATTGGTGGCCGTGACTA
CATGGAAGATGCGCATGTGTGCATCCCCAACCTAGCCAAGAATTTTGGTTTTAACATGGT
GGATGATGAAGTTATTTCCTTTTATGGGGTCTTTGATGGCCATGGTGGAAAAGATGCTGC
ACAGTATGTTCGCGA



Homology of Contig U35_16893 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2Bradi3g54290.13615e-59
Arabidopsis v10None