barSeed - Barley Seed Development Database

Probe CUST_14785_PI390587928

Source Contig U35_16894

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14785_PI390587928	Hv_44K_v2	GTTGGGTAAAGGTAAGTTTACGATTTTTCAATGAACAGGCTATCTGTGTAAAAGAAGGAA	962	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.380	1.523	1.165	0.913	0.309	0.309
Raw	1137.840	1981.136	1333.491	1622.632	196.707	212.403

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364039	1096	2e-24	989 - 1048	100	60 / 60	plus	ABC06341
MLOC	MLOC_17604.1	947	2e-24	884 - 943	100	60 / 60	plus	ABC06341
MLOC	MLOC_17604.2	811	2e-24	748 - 807	100	60 / 60	plus	ABC06341
JLOC1	JLOC1_12152.1	2198	8e-25	749 - 808	100	60 / 60	plus
Harvest21	ABC06342	710	3e-25	49 - 108	100	60 / 60	minus
Harvest21	ABC06341	1071	3e-25	49 - 108	100	60 / 60	minus	ABC06341
Harvest35	U35_16894	1071	3e-25	963 - 1022	100	60 / 60	plus

Contig Sequence (1071 bp)

>U35_16894 1071 Hv_44K_v2
CGCACATCTCCTCCGCCCTCTCTTCCTCCACCAGCTCCCCATCCATCCACCCACCCGCCC
GCCCTCACCGAGCTCCAGCAACTCCCACCACCCACCATGGCCGCCGCCGCCGCCACCGCC
GCCGCCGTCCGCCTCCCCTTGGCCGCCACGCGACGCGCCGCCGCGCGCCGGCCGGCGCGC
CTCGCGGTGCGCGCGGACGCCGCGCGGGCGGCCACGGCGCTGACCCAGGACGACCTCAAG
CGGCTCGCGGCGGTGCGCGCGGTGGAGCAAGTGCAGAGCGGCATGGTCCTGGGGCTCGGG
ACCGGGTCCACGGCCGCCTTCGCCGTCGCCGAGATCGGCGCGCTCCTTGCCACCGGCAAG
CTCTCCGGCATCGTCGGCGTGCCCACCTCCAAGCGCACCTTCGAGCAGGCCATGTCGCTC
GGCATCCCCCTCTCCACCCTCGACGACCACCCCGTCATCGACCTCGCCATCGACGGCGCC
GACGAGGTCGACCCAGATCTTAACCTCGTCAAAGGGCGGGGAGGAGCCCTTCTCCGGGAA
AAGATGGTGGAAGCAGCATCAGGAAAATTCGTCGTCGTCGTCGACGAGACGAAGCTAGTT
ACCGGCCTGGGCGGCAGCGGTCTCGCCATGCCGGTGGAGGTTGTGCAGTTCTGCTGGAAG
CACAATCAAGTAAGGCTGCAGGGCCTGTTCAACGAGGAAGGTTGCGAGGCGAAGCTGAGG
CTGAATGAGGACGGCAAGCCCTACGTTACCGACAACTCGAACTACATTGTCGATTTGTAC
TTCAAGACGCCGATCAGGGACGCGGTGGGCGCGGGCATGGAGATTGCGGCCTTGGAGGGA
GTTGTCGAGCATGGCTTGTTCTTGAACATGGCAACTTCAGTCATCATTGCTGGATCGGAC
GGTGTCAGTGTCAAAACAAAGTGAGTTTTTTTTTGGGGGGGTCAGCTACCTGTTGTTCAT
GTGTTGGGTAAAGGTAAGTTTACGATTTTTCAATGAACAGGCTATCTGTGTAAAAGAAGG
AAATAATGTTCTTCTATAAATCTCTTTCTTTCTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_16894 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g08030.1	281	5e-146	protein\|ribose-5-phosphate isomerase A, putative, expressed
Brachypodium v1_2	Bradi1g55740.1	280	1e-152
Arabidopsis v10	AT3G04790.1	276	3e-117	Ribose 5-phosphate isomerase, type A protein \| chr3:1313365-1314195 FORWARD LENGTH=276