barSeed - Barley Seed Development Database

Probe CUST_14775_PI390587928

Source Contig U35_28877

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14775_PI390587928	Hv_44K_v2	CGATCAAGGAAGTAGAGGCAGGTGATGATGAATACTCTCTCTTGGTTAATTTGAAGCGAC	682	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375660	3879	2e-24	1995 - 2054	100	60 / 60	plus	ABC00736
MLOC	AK369248	3769	2e-24	2003 - 2062	100	60 / 60	plus	ABC00736
MLOC	MLOC_5703.1	2886	2e-24	1207 - 1266	100	60 / 60	plus	ABC00736
JLOC1	JLOC1_3679.2	2688	8e-25	794 - 853	100	60 / 60	plus
JLOC1	JLOC1_3679.1	2816	8e-25	919 - 978	100	60 / 60	plus
Harvest21	ABC27979	742	3e-25	683 - 742	100	60 / 60	plus
Harvest35	U35_28877	742	3e-25	683 - 742	100	60 / 60	plus

Contig Sequence (742 bp)

>U35_28877 742 Hv_44K_v2
TCTCAAAACTGCAAGACACCTTCTGTAGCTAGAGATGGGGACAATGAATCCTCCGAGATT
CACATCAGTCGAATGCTGCATATCTTAAGGGAATTTTCGGATGACCCAGTCCTGAGTTCT
TACGTCATTGATGATATTTGGGATGACATGAAGGCCATGAAAGACTGGAAGTGTATAATC
TCCATGCTTCTGGATGAAACCCCGATAGCTGAGCTTACTGACATGGATGGAACAAATCTA
GTTCGGATGCTGCGAGCCTCTGCTAAGAAGGCTGTCGGGGAAAGAATAGTTCCTGCAACT
GACATTAGGAAGATGTACTATAACAAATCCCAAAAGGAGATATTAGAAAATAGCAAGAGT
GACATAACCAATGCCTTGATGAAGAGGTACCCGCAGCTTTTGAGAAAATACTTGCCTGAC
AAGGCCAAGATATCCCCTCTAATTGATATGATGATGCTTTTGAAACTTGAGATGTACTCA
CTGAAAAGGCAAGAGCAGAATTTCAAGGCCGCCATAGATCTAATTGTTGATGCCTTCTTC
AAACATGGTGACAAGGATACCTTAAGATCTTGCATCAAGGTAATAGCTTCCTGTTGCATG
AAGTGTCAGGCGGATCTTCTAGATTATGCTGAAAATAAACTTAAGACTCTTGAAGATGAG
TTGGTTTTGAAAGTCAAAACTGCGATCAAGGAAGTAGAGGCAGGTGATGATGAATACTCT
CTCTTGGTTAATTTGAAGCGAC

Homology of Contig U35_28877 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g09620.2	979	3e-139	protein\|SCC3, putative, expressed
Brachypodium v1_2	Bradi4g11510.2	900	2e-149
Arabidopsis v10	AT2G47980.1	1098	2e-96	\| Symbols: SCC3, ATSCC3 \| sister-chromatid cohesion protein 3 \| chr2:19631423-19636795 FORWARD LENGTH=1098